Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_06320

Experiment: m.b. Chlorite 0.2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_06305 and CA264_06310 overlap by 4 nucleotidesCA264_06310 and CA264_06315 are separated by 2 nucleotidesCA264_06315 and CA264_06320 are separated by 62 nucleotidesCA264_06320 and CA264_06325 are separated by 22 nucleotidesCA264_06325 and CA264_06330 overlap by 4 nucleotidesCA264_06330 and CA264_06335 are separated by 5 nucleotides CA264_06305: CA264_06305 - pH homeostasis protein A, at 1,466,633 to 1,468,942 _06305 CA264_06310: CA264_06310 - cation:proton antiporter, at 1,468,939 to 1,469,481 _06310 CA264_06315: CA264_06315 - cation:proton antiporter, at 1,469,484 to 1,469,840 _06315 CA264_06320: CA264_06320 - Na+/H+ antiporter subunit D, at 1,469,903 to 1,471,420 _06320 CA264_06325: CA264_06325 - cation:proton antiporter, at 1,471,443 to 1,471,940 _06325 CA264_06330: CA264_06330 - cation:proton antiporter, at 1,471,937 to 1,472,206 _06330 CA264_06335: CA264_06335 - Na+/H+ antiporter subunit G, at 1,472,212 to 1,472,655 _06335 Position (kb) 1469 1470 1471 1472Strain fitness (log2 ratio) -2 -1 0 1 2at 1469.005 kb on + strand, within CA264_06310at 1469.006 kb on - strand, within CA264_06310at 1469.110 kb on - strand, within CA264_06310at 1469.110 kb on - strand, within CA264_06310at 1469.143 kb on + strand, within CA264_06310at 1469.144 kb on - strand, within CA264_06310at 1469.144 kb on - strand, within CA264_06310at 1469.275 kb on + strand, within CA264_06310at 1469.276 kb on - strand, within CA264_06310at 1469.280 kb on - strand, within CA264_06310at 1469.344 kb on + strand, within CA264_06310at 1469.344 kb on + strand, within CA264_06310at 1469.344 kb on + strand, within CA264_06310at 1469.344 kb on + strand, within CA264_06310at 1469.344 kb on + strand, within CA264_06310at 1469.345 kb on - strand, within CA264_06310at 1469.345 kb on - strand, within CA264_06310at 1469.385 kb on - strand, within CA264_06310at 1469.451 kb on + strandat 1469.451 kb on + strandat 1469.491 kb on + strandat 1469.536 kb on - strand, within CA264_06315at 1469.542 kb on + strand, within CA264_06315at 1469.569 kb on + strand, within CA264_06315at 1469.630 kb on + strand, within CA264_06315at 1469.654 kb on - strand, within CA264_06315at 1469.685 kb on + strand, within CA264_06315at 1469.685 kb on + strand, within CA264_06315at 1469.724 kb on - strand, within CA264_06315at 1469.789 kb on + strand, within CA264_06315at 1469.790 kb on - strand, within CA264_06315at 1469.838 kb on + strandat 1469.885 kb on + strandat 1469.892 kb on - strandat 1469.902 kb on + strandat 1469.903 kb on - strandat 1469.938 kb on + strandat 1469.939 kb on - strandat 1469.948 kb on + strandat 1470.091 kb on - strand, within CA264_06320at 1470.119 kb on - strand, within CA264_06320at 1470.234 kb on - strand, within CA264_06320at 1470.305 kb on + strand, within CA264_06320at 1470.305 kb on + strand, within CA264_06320at 1470.306 kb on - strand, within CA264_06320at 1470.306 kb on - strand, within CA264_06320at 1470.306 kb on - strand, within CA264_06320at 1470.321 kb on + strand, within CA264_06320at 1470.393 kb on - strand, within CA264_06320at 1470.447 kb on + strand, within CA264_06320at 1470.447 kb on + strand, within CA264_06320at 1470.448 kb on - strand, within CA264_06320at 1470.448 kb on - strand, within CA264_06320at 1470.448 kb on - strand, within CA264_06320at 1470.448 kb on - strand, within CA264_06320at 1470.448 kb on - strand, within CA264_06320at 1470.448 kb on - strand, within CA264_06320at 1470.448 kb on - strand, within CA264_06320at 1470.449 kb on + strand, within CA264_06320at 1470.449 kb on + strand, within CA264_06320at 1470.528 kb on + strand, within CA264_06320at 1470.532 kb on + strand, within CA264_06320at 1470.533 kb on - strand, within CA264_06320at 1470.533 kb on - strand, within CA264_06320at 1470.611 kb on + strand, within CA264_06320at 1470.626 kb on - strand, within CA264_06320at 1470.643 kb on + strand, within CA264_06320at 1470.655 kb on + strand, within CA264_06320at 1470.677 kb on - strand, within CA264_06320at 1470.724 kb on + strand, within CA264_06320at 1470.725 kb on - strand, within CA264_06320at 1470.725 kb on - strand, within CA264_06320at 1470.725 kb on - strand, within CA264_06320at 1470.842 kb on + strand, within CA264_06320at 1470.844 kb on + strand, within CA264_06320at 1470.844 kb on + strand, within CA264_06320at 1470.844 kb on + strand, within CA264_06320at 1470.844 kb on + strand, within CA264_06320at 1470.845 kb on - strand, within CA264_06320at 1470.845 kb on - strand, within CA264_06320at 1470.845 kb on - strand, within CA264_06320at 1471.127 kb on + strand, within CA264_06320at 1471.224 kb on + strand, within CA264_06320at 1471.224 kb on + strand, within CA264_06320at 1471.225 kb on - strand, within CA264_06320at 1471.274 kb on + strandat 1471.275 kb on - strandat 1471.275 kb on - strandat 1471.281 kb on - strandat 1471.281 kb on - strandat 1471.329 kb on - strandat 1471.407 kb on + strandat 1471.407 kb on + strandat 1471.418 kb on + strandat 1471.427 kb on + strandat 1471.428 kb on - strandat 1471.437 kb on - strandat 1471.437 kb on - strandat 1471.437 kb on - strandat 1471.437 kb on - strandat 1471.489 kb on - strandat 1471.494 kb on + strand, within CA264_06325at 1471.525 kb on - strand, within CA264_06325at 1471.525 kb on - strand, within CA264_06325at 1471.601 kb on + strand, within CA264_06325at 1471.602 kb on - strand, within CA264_06325at 1471.606 kb on - strand, within CA264_06325at 1471.710 kb on + strand, within CA264_06325at 1471.711 kb on - strand, within CA264_06325at 1471.711 kb on - strand, within CA264_06325at 1471.766 kb on - strand, within CA264_06325at 1471.784 kb on + strand, within CA264_06325at 1471.784 kb on + strand, within CA264_06325at 1471.811 kb on + strand, within CA264_06325at 1471.812 kb on - strand, within CA264_06325at 1471.814 kb on - strand, within CA264_06325at 1471.819 kb on + strand, within CA264_06325at 1471.819 kb on + strand, within CA264_06325at 1471.819 kb on + strand, within CA264_06325at 1471.819 kb on + strand, within CA264_06325at 1471.843 kb on - strand, within CA264_06325at 1471.856 kb on - strand, within CA264_06325at 1471.856 kb on - strand, within CA264_06325at 1471.970 kb on - strand, within CA264_06330at 1471.980 kb on + strand, within CA264_06330at 1472.086 kb on - strand, within CA264_06330at 1472.181 kb on - strandat 1472.183 kb on + strandat 1472.188 kb on + strandat 1472.189 kb on - strandat 1472.189 kb on - strandat 1472.189 kb on - strandat 1472.197 kb on + strandat 1472.224 kb on - strandat 1472.224 kb on - strandat 1472.226 kb on - strandat 1472.330 kb on - strand, within CA264_06335

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.2 mM
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1,469,005 + CA264_06310 0.12 -0.2
1,469,006 - CA264_06310 0.12 -1.0
1,469,110 - CA264_06310 0.31 -0.8
1,469,110 - CA264_06310 0.31 -0.6
1,469,143 + CA264_06310 0.38 +1.1
1,469,144 - CA264_06310 0.38 +0.0
1,469,144 - CA264_06310 0.38 -1.1
1,469,275 + CA264_06310 0.62 -0.6
1,469,276 - CA264_06310 0.62 -0.7
1,469,280 - CA264_06310 0.63 -0.3
1,469,344 + CA264_06310 0.75 -0.1
1,469,344 + CA264_06310 0.75 -1.1
1,469,344 + CA264_06310 0.75 +1.2
1,469,344 + CA264_06310 0.75 -0.1
1,469,344 + CA264_06310 0.75 -0.1
1,469,345 - CA264_06310 0.75 +0.4
1,469,345 - CA264_06310 0.75 +0.8
1,469,385 - CA264_06310 0.82 -0.5
1,469,451 + -0.3
1,469,451 + -0.3
1,469,491 + +0.3
1,469,536 - CA264_06315 0.15 +0.5
1,469,542 + CA264_06315 0.16 +0.5
1,469,569 + CA264_06315 0.24 -1.2
1,469,630 + CA264_06315 0.41 -0.2
1,469,654 - CA264_06315 0.48 +0.5
1,469,685 + CA264_06315 0.56 +0.7
1,469,685 + CA264_06315 0.56 -0.5
1,469,724 - CA264_06315 0.67 -0.9
1,469,789 + CA264_06315 0.85 +0.0
1,469,790 - CA264_06315 0.86 -0.9
1,469,838 + -0.9
1,469,885 + -0.4
1,469,892 - -0.0
1,469,902 + -1.1
1,469,903 - -0.3
1,469,938 + +0.1
1,469,939 - +0.2
1,469,948 + -0.9
1,470,091 - CA264_06320 0.12 +0.4
1,470,119 - CA264_06320 0.14 -0.0
1,470,234 - CA264_06320 0.22 +0.1
1,470,305 + CA264_06320 0.26 -0.5
1,470,305 + CA264_06320 0.26 +0.6
1,470,306 - CA264_06320 0.27 -0.1
1,470,306 - CA264_06320 0.27 -1.1
1,470,306 - CA264_06320 0.27 +0.9
1,470,321 + CA264_06320 0.28 -0.6
1,470,393 - CA264_06320 0.32 +0.3
1,470,447 + CA264_06320 0.36 +0.9
1,470,447 + CA264_06320 0.36 -0.4
1,470,448 - CA264_06320 0.36 -0.8
1,470,448 - CA264_06320 0.36 +0.0
1,470,448 - CA264_06320 0.36 -0.5
1,470,448 - CA264_06320 0.36 +0.7
1,470,448 - CA264_06320 0.36 -0.4
1,470,448 - CA264_06320 0.36 -1.0
1,470,448 - CA264_06320 0.36 -0.5
1,470,449 + CA264_06320 0.36 +0.5
1,470,449 + CA264_06320 0.36 +0.0
1,470,528 + CA264_06320 0.41 -0.3
1,470,532 + CA264_06320 0.41 -0.2
1,470,533 - CA264_06320 0.42 -1.3
1,470,533 - CA264_06320 0.42 -0.6
1,470,611 + CA264_06320 0.47 -0.3
1,470,626 - CA264_06320 0.48 +0.7
1,470,643 + CA264_06320 0.49 -0.3
1,470,655 + CA264_06320 0.50 +1.2
1,470,677 - CA264_06320 0.51 +0.1
1,470,724 + CA264_06320 0.54 -0.4
1,470,725 - CA264_06320 0.54 -1.1
1,470,725 - CA264_06320 0.54 +0.5
1,470,725 - CA264_06320 0.54 +1.9
1,470,842 + CA264_06320 0.62 -1.2
1,470,844 + CA264_06320 0.62 -0.3
1,470,844 + CA264_06320 0.62 -0.4
1,470,844 + CA264_06320 0.62 -2.1
1,470,844 + CA264_06320 0.62 -0.4
1,470,845 - CA264_06320 0.62 -0.2
1,470,845 - CA264_06320 0.62 -0.4
1,470,845 - CA264_06320 0.62 -0.5
1,471,127 + CA264_06320 0.81 +1.7
1,471,224 + CA264_06320 0.87 +0.3
1,471,224 + CA264_06320 0.87 +0.2
1,471,225 - CA264_06320 0.87 -1.3
1,471,274 + -0.4
1,471,275 - -0.2
1,471,275 - -0.5
1,471,281 - -0.4
1,471,281 - +0.0
1,471,329 - +0.2
1,471,407 + -0.4
1,471,407 + +0.2
1,471,418 + -0.0
1,471,427 + +0.2
1,471,428 - -0.1
1,471,437 - -0.1
1,471,437 - -0.0
1,471,437 - -0.1
1,471,437 - -0.1
1,471,489 - -0.2
1,471,494 + CA264_06325 0.10 +1.0
1,471,525 - CA264_06325 0.16 -0.2
1,471,525 - CA264_06325 0.16 +0.7
1,471,601 + CA264_06325 0.32 -0.0
1,471,602 - CA264_06325 0.32 +0.2
1,471,606 - CA264_06325 0.33 -0.7
1,471,710 + CA264_06325 0.54 -0.1
1,471,711 - CA264_06325 0.54 +1.1
1,471,711 - CA264_06325 0.54 -0.2
1,471,766 - CA264_06325 0.65 -0.3
1,471,784 + CA264_06325 0.68 +0.8
1,471,784 + CA264_06325 0.68 -0.5
1,471,811 + CA264_06325 0.74 +0.7
1,471,812 - CA264_06325 0.74 -0.2
1,471,814 - CA264_06325 0.74 +0.4
1,471,819 + CA264_06325 0.76 +0.5
1,471,819 + CA264_06325 0.76 +1.3
1,471,819 + CA264_06325 0.76 -0.4
1,471,819 + CA264_06325 0.76 +1.1
1,471,843 - CA264_06325 0.80 +1.1
1,471,856 - CA264_06325 0.83 +1.8
1,471,856 - CA264_06325 0.83 -0.2
1,471,970 - CA264_06330 0.12 +1.6
1,471,980 + CA264_06330 0.16 +1.5
1,472,086 - CA264_06330 0.55 +0.0
1,472,181 - +0.6
1,472,183 + +0.0
1,472,188 + +1.0
1,472,189 - +0.6
1,472,189 - -0.3
1,472,189 - +0.3
1,472,197 + -0.2
1,472,224 - +0.1
1,472,224 - +1.0
1,472,226 - +0.0
1,472,330 - CA264_06335 0.27 -0.1

Or see this region's nucleotide sequence