Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_05990

Experiment: m.b. Chlorite 0.2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_05985 and CA264_05990 are separated by 308 nucleotidesCA264_05990 and CA264_05995 are separated by 74 nucleotides CA264_05985: CA264_05985 - MBL fold hydrolase, at 1,397,599 to 1,398,990 _05985 CA264_05990: CA264_05990 - hypothetical protein, at 1,399,299 to 1,399,910 _05990 CA264_05995: CA264_05995 - alkaline phosphatase family protein, at 1,399,985 to 1,401,247 _05995 Position (kb) 1399 1400Strain fitness (log2 ratio) -2 -1 0 1at 1398.377 kb on + strand, within CA264_05985at 1398.381 kb on + strand, within CA264_05985at 1398.381 kb on + strand, within CA264_05985at 1398.381 kb on + strand, within CA264_05985at 1398.381 kb on + strand, within CA264_05985at 1398.429 kb on + strand, within CA264_05985at 1398.429 kb on + strand, within CA264_05985at 1398.429 kb on + strand, within CA264_05985at 1398.434 kb on - strand, within CA264_05985at 1398.481 kb on + strand, within CA264_05985at 1398.531 kb on + strand, within CA264_05985at 1398.531 kb on + strand, within CA264_05985at 1398.532 kb on - strand, within CA264_05985at 1398.532 kb on - strand, within CA264_05985at 1398.532 kb on - strand, within CA264_05985at 1398.540 kb on + strand, within CA264_05985at 1398.541 kb on - strand, within CA264_05985at 1398.561 kb on + strand, within CA264_05985at 1398.592 kb on - strand, within CA264_05985at 1398.603 kb on + strand, within CA264_05985at 1398.646 kb on + strand, within CA264_05985at 1398.647 kb on - strand, within CA264_05985at 1398.647 kb on - strand, within CA264_05985at 1398.649 kb on + strand, within CA264_05985at 1398.649 kb on + strand, within CA264_05985at 1398.649 kb on + strand, within CA264_05985at 1398.686 kb on + strand, within CA264_05985at 1398.987 kb on - strandat 1399.009 kb on + strandat 1399.150 kb on - strandat 1399.160 kb on + strandat 1399.161 kb on - strandat 1399.164 kb on + strandat 1399.164 kb on + strandat 1399.169 kb on + strandat 1399.170 kb on - strandat 1399.250 kb on + strandat 1399.298 kb on + strandat 1399.464 kb on - strand, within CA264_05990at 1399.544 kb on - strand, within CA264_05990at 1399.579 kb on - strand, within CA264_05990at 1399.603 kb on - strand, within CA264_05990at 1399.609 kb on + strand, within CA264_05990at 1399.609 kb on + strand, within CA264_05990at 1399.678 kb on + strand, within CA264_05990at 1399.679 kb on - strand, within CA264_05990at 1399.679 kb on - strand, within CA264_05990at 1399.681 kb on + strand, within CA264_05990at 1399.738 kb on + strand, within CA264_05990at 1399.739 kb on - strand, within CA264_05990at 1399.739 kb on - strand, within CA264_05990at 1399.739 kb on - strand, within CA264_05990at 1399.741 kb on - strand, within CA264_05990at 1399.747 kb on + strand, within CA264_05990at 1399.748 kb on - strand, within CA264_05990at 1399.803 kb on - strand, within CA264_05990at 1399.808 kb on - strand, within CA264_05990at 1399.871 kb on - strandat 1399.882 kb on + strandat 1399.882 kb on + strandat 1399.882 kb on + strandat 1399.883 kb on - strandat 1399.883 kb on - strandat 1399.884 kb on + strandat 1399.884 kb on + strandat 1399.885 kb on - strandat 1399.885 kb on - strandat 1399.885 kb on - strandat 1399.885 kb on - strandat 1399.909 kb on - strandat 1399.914 kb on + strandat 1399.915 kb on - strandat 1399.915 kb on - strandat 1399.923 kb on + strandat 1399.926 kb on - strandat 1399.976 kb on + strandat 1399.981 kb on + strandat 1399.981 kb on + strandat 1399.982 kb on - strandat 1400.002 kb on + strandat 1400.038 kb on - strandat 1400.078 kb on + strandat 1400.078 kb on + strandat 1400.078 kb on + strandat 1400.078 kb on + strandat 1400.079 kb on - strandat 1400.114 kb on - strand, within CA264_05995at 1400.252 kb on + strand, within CA264_05995at 1400.283 kb on + strand, within CA264_05995at 1400.283 kb on + strand, within CA264_05995at 1400.284 kb on - strand, within CA264_05995at 1400.317 kb on - strand, within CA264_05995at 1400.317 kb on - strand, within CA264_05995at 1400.348 kb on + strand, within CA264_05995at 1400.348 kb on + strand, within CA264_05995at 1400.358 kb on + strand, within CA264_05995at 1400.399 kb on + strand, within CA264_05995at 1400.511 kb on + strand, within CA264_05995at 1400.511 kb on + strand, within CA264_05995at 1400.739 kb on + strand, within CA264_05995at 1400.745 kb on + strand, within CA264_05995at 1400.745 kb on + strand, within CA264_05995at 1400.796 kb on + strand, within CA264_05995

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.2 mM
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1,398,377 + CA264_05985 0.56 -0.0
1,398,381 + CA264_05985 0.56 +0.7
1,398,381 + CA264_05985 0.56 -0.3
1,398,381 + CA264_05985 0.56 +0.9
1,398,381 + CA264_05985 0.56 -0.4
1,398,429 + CA264_05985 0.60 -0.4
1,398,429 + CA264_05985 0.60 +1.2
1,398,429 + CA264_05985 0.60 -0.5
1,398,434 - CA264_05985 0.60 +0.5
1,398,481 + CA264_05985 0.63 +0.4
1,398,531 + CA264_05985 0.67 -0.2
1,398,531 + CA264_05985 0.67 -0.8
1,398,532 - CA264_05985 0.67 -0.1
1,398,532 - CA264_05985 0.67 -0.1
1,398,532 - CA264_05985 0.67 +0.0
1,398,540 + CA264_05985 0.68 -0.2
1,398,541 - CA264_05985 0.68 +0.5
1,398,561 + CA264_05985 0.69 -0.8
1,398,592 - CA264_05985 0.71 +0.9
1,398,603 + CA264_05985 0.72 -0.4
1,398,646 + CA264_05985 0.75 -0.5
1,398,647 - CA264_05985 0.75 -0.1
1,398,647 - CA264_05985 0.75 -0.2
1,398,649 + CA264_05985 0.75 -0.5
1,398,649 + CA264_05985 0.75 -1.0
1,398,649 + CA264_05985 0.75 -0.3
1,398,686 + CA264_05985 0.78 -1.4
1,398,987 - +0.1
1,399,009 + +0.3
1,399,150 - -0.5
1,399,160 + +1.1
1,399,161 - +0.1
1,399,164 + +0.0
1,399,164 + -0.0
1,399,169 + -0.1
1,399,170 - -0.1
1,399,250 + -2.5
1,399,298 + +0.3
1,399,464 - CA264_05990 0.27 -1.3
1,399,544 - CA264_05990 0.40 +0.2
1,399,579 - CA264_05990 0.46 -0.2
1,399,603 - CA264_05990 0.50 +0.2
1,399,609 + CA264_05990 0.51 -0.3
1,399,609 + CA264_05990 0.51 +0.1
1,399,678 + CA264_05990 0.62 -0.5
1,399,679 - CA264_05990 0.62 -0.6
1,399,679 - CA264_05990 0.62 +0.2
1,399,681 + CA264_05990 0.62 -0.6
1,399,738 + CA264_05990 0.72 +0.0
1,399,739 - CA264_05990 0.72 -0.1
1,399,739 - CA264_05990 0.72 +0.2
1,399,739 - CA264_05990 0.72 -0.7
1,399,741 - CA264_05990 0.72 +0.7
1,399,747 + CA264_05990 0.73 -0.3
1,399,748 - CA264_05990 0.73 -1.3
1,399,803 - CA264_05990 0.82 -0.2
1,399,808 - CA264_05990 0.83 +0.4
1,399,871 - +0.4
1,399,882 + +0.3
1,399,882 + -1.8
1,399,882 + +1.7
1,399,883 - -0.7
1,399,883 - +0.1
1,399,884 + +0.2
1,399,884 + -0.2
1,399,885 - +0.1
1,399,885 - +0.3
1,399,885 - +0.3
1,399,885 - +0.9
1,399,909 - +0.7
1,399,914 + +0.9
1,399,915 - -0.1
1,399,915 - +0.8
1,399,923 + -0.5
1,399,926 - -0.4
1,399,976 + -1.5
1,399,981 + +0.2
1,399,981 + +0.1
1,399,982 - +0.0
1,400,002 + +0.1
1,400,038 - -0.8
1,400,078 + -1.3
1,400,078 + -0.4
1,400,078 + -2.3
1,400,078 + -0.2
1,400,079 - +0.3
1,400,114 - CA264_05995 0.10 -0.9
1,400,252 + CA264_05995 0.21 -0.5
1,400,283 + CA264_05995 0.24 -0.7
1,400,283 + CA264_05995 0.24 +0.1
1,400,284 - CA264_05995 0.24 +0.5
1,400,317 - CA264_05995 0.26 -0.5
1,400,317 - CA264_05995 0.26 +0.6
1,400,348 + CA264_05995 0.29 -0.3
1,400,348 + CA264_05995 0.29 -0.1
1,400,358 + CA264_05995 0.30 -0.7
1,400,399 + CA264_05995 0.33 -1.2
1,400,511 + CA264_05995 0.42 -0.6
1,400,511 + CA264_05995 0.42 +0.3
1,400,739 + CA264_05995 0.60 -0.4
1,400,745 + CA264_05995 0.60 +1.1
1,400,745 + CA264_05995 0.60 -0.5
1,400,796 + CA264_05995 0.64 -0.2

Or see this region's nucleotide sequence