Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_05920

Experiment: m.b. Chlorite 0.2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_05915 and CA264_05920 are separated by 179 nucleotidesCA264_05920 and CA264_05925 are separated by 126 nucleotides CA264_05915: CA264_05915 - hypothetical protein, at 1,377,819 to 1,378,358 _05915 CA264_05920: CA264_05920 - hypothetical protein, at 1,378,538 to 1,381,936 _05920 CA264_05925: CA264_05925 - hypothetical protein, at 1,382,063 to 1,384,291 _05925 Position (kb) 1378 1379 1380 1381 1382Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1377.598 kb on + strandat 1377.598 kb on + strandat 1377.603 kb on + strandat 1377.604 kb on - strandat 1377.621 kb on + strandat 1377.627 kb on + strandat 1377.628 kb on - strandat 1377.630 kb on + strandat 1377.630 kb on + strandat 1377.631 kb on - strandat 1377.643 kb on - strandat 1377.652 kb on - strandat 1377.775 kb on - strandat 1377.780 kb on + strandat 1377.780 kb on + strandat 1377.805 kb on + strandat 1377.813 kb on + strandat 1377.818 kb on + strandat 1377.824 kb on - strandat 1377.867 kb on - strandat 1378.015 kb on - strand, within CA264_05915at 1378.019 kb on + strand, within CA264_05915at 1378.095 kb on + strand, within CA264_05915at 1378.096 kb on - strand, within CA264_05915at 1378.204 kb on + strand, within CA264_05915at 1378.250 kb on + strand, within CA264_05915at 1378.251 kb on - strand, within CA264_05915at 1378.251 kb on - strand, within CA264_05915at 1378.253 kb on - strand, within CA264_05915at 1378.260 kb on + strand, within CA264_05915at 1378.280 kb on + strand, within CA264_05915at 1378.281 kb on - strand, within CA264_05915at 1378.283 kb on + strand, within CA264_05915at 1378.284 kb on - strand, within CA264_05915at 1378.284 kb on - strand, within CA264_05915at 1378.284 kb on - strand, within CA264_05915at 1378.284 kb on - strand, within CA264_05915at 1378.284 kb on - strand, within CA264_05915at 1378.287 kb on + strand, within CA264_05915at 1378.288 kb on - strand, within CA264_05915at 1378.288 kb on - strand, within CA264_05915at 1378.345 kb on + strandat 1378.348 kb on - strandat 1378.385 kb on - strandat 1378.386 kb on + strandat 1378.386 kb on + strandat 1378.453 kb on + strandat 1378.453 kb on + strandat 1378.453 kb on + strandat 1378.511 kb on + strandat 1378.517 kb on + strandat 1378.522 kb on + strandat 1378.524 kb on + strandat 1378.524 kb on + strandat 1378.524 kb on + strandat 1378.524 kb on + strandat 1378.529 kb on - strandat 1381.502 kb on + strand, within CA264_05920at 1381.647 kb on - strandat 1381.935 kb on - strandat 1381.949 kb on + strandat 1381.975 kb on + strandat 1381.975 kb on + strandat 1382.003 kb on + strandat 1382.004 kb on - strandat 1382.032 kb on - strandat 1382.051 kb on - strandat 1382.159 kb on - strandat 1382.160 kb on + strandat 1382.160 kb on + strandat 1382.160 kb on + strandat 1382.161 kb on - strandat 1382.161 kb on - strandat 1382.161 kb on - strandat 1382.161 kb on - strandat 1382.161 kb on - strandat 1382.224 kb on - strandat 1382.280 kb on - strandat 1382.280 kb on - strandat 1382.280 kb on - strandat 1382.352 kb on + strand, within CA264_05925at 1382.354 kb on + strand, within CA264_05925at 1382.355 kb on - strand, within CA264_05925at 1382.447 kb on + strand, within CA264_05925at 1382.448 kb on - strand, within CA264_05925at 1382.489 kb on - strand, within CA264_05925at 1382.523 kb on - strand, within CA264_05925at 1382.543 kb on + strand, within CA264_05925at 1382.562 kb on + strand, within CA264_05925at 1382.562 kb on - strand, within CA264_05925at 1382.595 kb on + strand, within CA264_05925at 1382.596 kb on - strand, within CA264_05925at 1382.628 kb on - strand, within CA264_05925at 1382.822 kb on + strand, within CA264_05925at 1382.866 kb on + strand, within CA264_05925

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.2 mM
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1,377,598 + -0.6
1,377,598 + -1.7
1,377,603 + +0.1
1,377,604 - +0.7
1,377,621 + -0.7
1,377,627 + +0.1
1,377,628 - +0.4
1,377,630 + -1.0
1,377,630 + -0.5
1,377,631 - +0.3
1,377,643 - +1.2
1,377,652 - -1.0
1,377,775 - +0.4
1,377,780 + -0.4
1,377,780 + +0.3
1,377,805 + -0.8
1,377,813 + -0.2
1,377,818 + +0.6
1,377,824 - +0.0
1,377,867 - -0.2
1,378,015 - CA264_05915 0.36 -0.2
1,378,019 + CA264_05915 0.37 +0.2
1,378,095 + CA264_05915 0.51 -0.1
1,378,096 - CA264_05915 0.51 +0.1
1,378,204 + CA264_05915 0.71 -2.7
1,378,250 + CA264_05915 0.80 +0.6
1,378,251 - CA264_05915 0.80 +1.6
1,378,251 - CA264_05915 0.80 -0.2
1,378,253 - CA264_05915 0.80 -0.1
1,378,260 + CA264_05915 0.82 +0.7
1,378,280 + CA264_05915 0.85 +0.9
1,378,281 - CA264_05915 0.86 -1.1
1,378,283 + CA264_05915 0.86 +0.5
1,378,284 - CA264_05915 0.86 +0.2
1,378,284 - CA264_05915 0.86 +0.3
1,378,284 - CA264_05915 0.86 +0.5
1,378,284 - CA264_05915 0.86 -0.3
1,378,284 - CA264_05915 0.86 +0.3
1,378,287 + CA264_05915 0.87 +0.0
1,378,288 - CA264_05915 0.87 -0.2
1,378,288 - CA264_05915 0.87 -0.6
1,378,345 + +2.7
1,378,348 - -0.3
1,378,385 - -0.0
1,378,386 + -0.1
1,378,386 + -0.0
1,378,453 + +0.0
1,378,453 + -0.4
1,378,453 + -0.3
1,378,511 + +0.8
1,378,517 + +0.1
1,378,522 + -0.6
1,378,524 + +0.5
1,378,524 + -0.3
1,378,524 + +0.2
1,378,524 + +1.5
1,378,529 - -0.7
1,381,502 + CA264_05920 0.87 +1.0
1,381,647 - -1.9
1,381,935 - +1.6
1,381,949 + +1.3
1,381,975 + -0.2
1,381,975 + -0.6
1,382,003 + -0.0
1,382,004 - +0.2
1,382,032 - -0.1
1,382,051 - -2.6
1,382,159 - +2.9
1,382,160 + -0.5
1,382,160 + +0.2
1,382,160 + +1.4
1,382,161 - +0.4
1,382,161 - +0.1
1,382,161 - -1.1
1,382,161 - -0.0
1,382,161 - +0.2
1,382,224 - -0.0
1,382,280 - -0.5
1,382,280 - +0.1
1,382,280 - +0.5
1,382,352 + CA264_05925 0.13 -1.1
1,382,354 + CA264_05925 0.13 -0.1
1,382,355 - CA264_05925 0.13 -0.3
1,382,447 + CA264_05925 0.17 +0.4
1,382,448 - CA264_05925 0.17 +0.3
1,382,489 - CA264_05925 0.19 -0.6
1,382,523 - CA264_05925 0.21 +0.3
1,382,543 + CA264_05925 0.22 -0.3
1,382,562 + CA264_05925 0.22 +0.3
1,382,562 - CA264_05925 0.22 +0.3
1,382,595 + CA264_05925 0.24 +0.2
1,382,596 - CA264_05925 0.24 +0.1
1,382,628 - CA264_05925 0.25 -0.1
1,382,822 + CA264_05925 0.34 +1.1
1,382,866 + CA264_05925 0.36 -0.5

Or see this region's nucleotide sequence