Experiment: m.b. Chlorite 0.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_05485 and CA264_05490 are separated by 545 nucleotides CA264_05490 and CA264_05495 are separated by 73 nucleotides CA264_05495 and CA264_05500 are separated by 78 nucleotides
CA264_05485: CA264_05485 - T9SS C-terminal target domain-containing protein, at 1,273,348 to 1,276,467
_05485
CA264_05490: CA264_05490 - hypothetical protein, at 1,277,013 to 1,277,885
_05490
CA264_05495: CA264_05495 - peptide-methionine (S)-S-oxide reductase, at 1,277,959 to 1,278,633
_05495
CA264_05500: CA264_05500 - hypothetical protein, at 1,278,712 to 1,279,110
_05500
Position (kb)
1277
1278 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1276.016 kb on + strand, within CA264_05485 at 1276.016 kb on + strand, within CA264_05485 at 1276.126 kb on + strand, within CA264_05485 at 1276.126 kb on + strand, within CA264_05485 at 1276.127 kb on - strand, within CA264_05485 at 1276.127 kb on - strand, within CA264_05485 at 1276.148 kb on - strand, within CA264_05485 at 1276.163 kb on + strand at 1276.163 kb on + strand at 1276.270 kb on + strand at 1276.274 kb on + strand at 1276.383 kb on + strand at 1276.384 kb on - strand at 1276.479 kb on - strand at 1276.492 kb on + strand at 1276.581 kb on - strand at 1276.581 kb on - strand at 1276.581 kb on - strand at 1276.590 kb on + strand at 1276.590 kb on + strand at 1276.611 kb on + strand at 1276.611 kb on + strand at 1276.616 kb on + strand at 1276.634 kb on + strand at 1276.634 kb on + strand at 1276.780 kb on - strand at 1276.780 kb on - strand at 1276.780 kb on - strand at 1276.793 kb on - strand at 1276.856 kb on + strand at 1276.860 kb on + strand at 1276.860 kb on + strand at 1276.860 kb on + strand at 1276.860 kb on + strand at 1276.860 kb on + strand at 1276.861 kb on - strand at 1276.861 kb on - strand at 1276.861 kb on - strand at 1276.950 kb on + strand at 1276.951 kb on - strand at 1276.951 kb on - strand at 1276.951 kb on - strand at 1276.951 kb on - strand at 1276.998 kb on - strand at 1277.014 kb on + strand at 1277.081 kb on + strand at 1277.121 kb on + strand, within CA264_05490 at 1277.161 kb on - strand, within CA264_05490 at 1277.161 kb on - strand, within CA264_05490 at 1277.161 kb on - strand, within CA264_05490 at 1277.255 kb on - strand, within CA264_05490 at 1277.321 kb on + strand, within CA264_05490 at 1277.322 kb on - strand, within CA264_05490 at 1277.328 kb on + strand, within CA264_05490 at 1277.377 kb on + strand, within CA264_05490 at 1277.377 kb on + strand, within CA264_05490 at 1277.378 kb on - strand, within CA264_05490 at 1277.464 kb on + strand, within CA264_05490 at 1277.465 kb on - strand, within CA264_05490 at 1277.527 kb on + strand, within CA264_05490 at 1277.557 kb on - strand, within CA264_05490 at 1277.573 kb on - strand, within CA264_05490 at 1277.781 kb on + strand, within CA264_05490 at 1277.781 kb on + strand, within CA264_05490 at 1277.787 kb on + strand, within CA264_05490 at 1277.788 kb on - strand, within CA264_05490 at 1277.844 kb on + strand at 1277.856 kb on - strand at 1277.857 kb on + strand at 1277.858 kb on - strand at 1277.870 kb on + strand at 1277.890 kb on + strand at 1277.935 kb on + strand at 1277.936 kb on - strand at 1277.936 kb on - strand at 1277.938 kb on + strand at 1277.938 kb on + strand at 1277.945 kb on - strand at 1277.945 kb on - strand at 1277.954 kb on - strand at 1277.954 kb on - strand at 1277.958 kb on + strand at 1277.958 kb on + strand at 1277.959 kb on - strand at 1277.959 kb on - strand at 1277.978 kb on + strand at 1278.265 kb on + strand, within CA264_05495 at 1278.267 kb on + strand, within CA264_05495 at 1278.268 kb on - strand, within CA264_05495 at 1278.286 kb on + strand, within CA264_05495 at 1278.287 kb on - strand, within CA264_05495 at 1278.287 kb on - strand, within CA264_05495 at 1278.367 kb on + strand, within CA264_05495 at 1278.385 kb on + strand, within CA264_05495 at 1278.421 kb on + strand, within CA264_05495 at 1278.421 kb on + strand, within CA264_05495 at 1278.422 kb on - strand, within CA264_05495 at 1278.422 kb on - strand, within CA264_05495 at 1278.425 kb on + strand, within CA264_05495 at 1278.472 kb on + strand, within CA264_05495 at 1278.472 kb on + strand, within CA264_05495 at 1278.472 kb on + strand, within CA264_05495 at 1278.473 kb on - strand, within CA264_05495 at 1278.473 kb on - strand, within CA264_05495 at 1278.477 kb on - strand, within CA264_05495 at 1278.477 kb on - strand, within CA264_05495 at 1278.477 kb on - strand, within CA264_05495 at 1278.550 kb on + strand, within CA264_05495 at 1278.551 kb on - strand, within CA264_05495 at 1278.551 kb on - strand, within CA264_05495 at 1278.551 kb on - strand, within CA264_05495 at 1278.551 kb on - strand, within CA264_05495 at 1278.551 kb on - strand, within CA264_05495 at 1278.554 kb on + strand, within CA264_05495 at 1278.632 kb on - strand at 1278.642 kb on + strand at 1278.642 kb on + strand at 1278.643 kb on - strand at 1278.669 kb on + strand at 1278.700 kb on + strand at 1278.701 kb on - strand at 1278.705 kb on + strand at 1278.705 kb on + strand at 1278.706 kb on - strand at 1278.712 kb on - strand at 1278.731 kb on + strand at 1278.749 kb on + strand at 1278.767 kb on - strand, within CA264_05500
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chlorite 0.2 mM remove 1,276,016 + CA264_05485 0.86 -0.4 1,276,016 + CA264_05485 0.86 +0.0 1,276,126 + CA264_05485 0.89 -0.7 1,276,126 + CA264_05485 0.89 +0.3 1,276,127 - CA264_05485 0.89 +0.3 1,276,127 - CA264_05485 0.89 -0.1 1,276,148 - CA264_05485 0.90 -0.9 1,276,163 + -1.0 1,276,163 + -0.3 1,276,270 + -0.1 1,276,274 + +0.8 1,276,383 + +0.7 1,276,384 - +0.9 1,276,479 - -0.3 1,276,492 + -0.4 1,276,581 - +1.1 1,276,581 - -0.9 1,276,581 - -1.5 1,276,590 + +0.3 1,276,590 + -0.7 1,276,611 + -1.1 1,276,611 + +0.1 1,276,616 + -1.4 1,276,634 + +0.3 1,276,634 + -0.4 1,276,780 - -1.8 1,276,780 - -0.5 1,276,780 - -0.8 1,276,793 - -0.7 1,276,856 + +1.3 1,276,860 + -1.3 1,276,860 + -0.1 1,276,860 + +0.7 1,276,860 + +3.5 1,276,860 + -0.7 1,276,861 - +1.6 1,276,861 - -2.1 1,276,861 - -0.3 1,276,950 + -1.0 1,276,951 - -1.4 1,276,951 - -1.3 1,276,951 - +0.7 1,276,951 - -0.9 1,276,998 - +0.2 1,277,014 + -0.5 1,277,081 + +1.7 1,277,121 + CA264_05490 0.12 -0.0 1,277,161 - CA264_05490 0.17 +0.6 1,277,161 - CA264_05490 0.17 +1.7 1,277,161 - CA264_05490 0.17 -0.8 1,277,255 - CA264_05490 0.28 -0.3 1,277,321 + CA264_05490 0.35 +0.7 1,277,322 - CA264_05490 0.35 +0.7 1,277,328 + CA264_05490 0.36 +1.0 1,277,377 + CA264_05490 0.42 +0.7 1,277,377 + CA264_05490 0.42 +0.3 1,277,378 - CA264_05490 0.42 +0.8 1,277,464 + CA264_05490 0.52 +0.7 1,277,465 - CA264_05490 0.52 -0.8 1,277,527 + CA264_05490 0.59 +0.5 1,277,557 - CA264_05490 0.62 -1.2 1,277,573 - CA264_05490 0.64 -0.3 1,277,781 + CA264_05490 0.88 +0.2 1,277,781 + CA264_05490 0.88 +0.1 1,277,787 + CA264_05490 0.89 +0.2 1,277,788 - CA264_05490 0.89 -0.4 1,277,844 + -0.8 1,277,856 - +1.1 1,277,857 + +0.7 1,277,858 - +0.2 1,277,870 + -0.6 1,277,890 + +0.4 1,277,935 + +0.1 1,277,936 - -1.8 1,277,936 - -0.0 1,277,938 + +0.1 1,277,938 + -0.6 1,277,945 - -0.2 1,277,945 - +0.7 1,277,954 - +0.1 1,277,954 - +0.6 1,277,958 + -0.5 1,277,958 + -0.5 1,277,959 - +0.4 1,277,959 - +0.3 1,277,978 + -0.5 1,278,265 + CA264_05495 0.45 -0.7 1,278,267 + CA264_05495 0.46 -0.0 1,278,268 - CA264_05495 0.46 -0.4 1,278,286 + CA264_05495 0.48 -0.2 1,278,287 - CA264_05495 0.49 +0.2 1,278,287 - CA264_05495 0.49 -0.5 1,278,367 + CA264_05495 0.60 +0.0 1,278,385 + CA264_05495 0.63 -0.9 1,278,421 + CA264_05495 0.68 +0.2 1,278,421 + CA264_05495 0.68 +1.3 1,278,422 - CA264_05495 0.69 +0.9 1,278,422 - CA264_05495 0.69 +0.0 1,278,425 + CA264_05495 0.69 +0.1 1,278,472 + CA264_05495 0.76 +0.5 1,278,472 + CA264_05495 0.76 +0.3 1,278,472 + CA264_05495 0.76 -0.5 1,278,473 - CA264_05495 0.76 +0.2 1,278,473 - CA264_05495 0.76 -0.2 1,278,477 - CA264_05495 0.77 -0.4 1,278,477 - CA264_05495 0.77 -0.2 1,278,477 - CA264_05495 0.77 -1.0 1,278,550 + CA264_05495 0.88 -0.2 1,278,551 - CA264_05495 0.88 +0.1 1,278,551 - CA264_05495 0.88 +0.9 1,278,551 - CA264_05495 0.88 +0.0 1,278,551 - CA264_05495 0.88 +1.2 1,278,551 - CA264_05495 0.88 +0.2 1,278,554 + CA264_05495 0.88 -0.9 1,278,632 - +0.1 1,278,642 + +0.0 1,278,642 + -0.1 1,278,643 - -0.4 1,278,669 + +0.7 1,278,700 + +0.5 1,278,701 - -1.8 1,278,705 + -0.8 1,278,705 + +0.0 1,278,706 - -0.5 1,278,712 - +0.0 1,278,731 + -0.3 1,278,749 + +0.9 1,278,767 - CA264_05500 0.14 +0.3
Or see this region's nucleotide sequence