Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_02505

Experiment: m.b. Chlorite 0.2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_02495 and CA264_02500 are separated by 647 nucleotidesCA264_02500 and CA264_02505 are separated by 50 nucleotidesCA264_02505 and CA264_02510 are separated by 880 nucleotides CA264_02495: CA264_02495 - hypothetical protein, at 579,925 to 580,821 _02495 CA264_02500: CA264_02500 - hypothetical protein, at 581,469 to 581,738 _02500 CA264_02505: CA264_02505 - hypothetical protein, at 581,789 to 582,454 _02505 CA264_02510: CA264_02510 - TonB-dependent receptor, at 583,335 to 585,830 _02510 Position (kb) 581 582 583Strain fitness (log2 ratio) -2 -1 0 1at 580.803 kb on - strandat 580.803 kb on - strandat 580.803 kb on - strandat 580.803 kb on - strandat 580.818 kb on - strandat 580.927 kb on + strandat 580.942 kb on + strandat 580.942 kb on + strandat 580.942 kb on + strandat 580.942 kb on + strandat 580.943 kb on - strandat 580.943 kb on - strandat 580.943 kb on - strandat 580.943 kb on - strandat 580.943 kb on - strandat 580.943 kb on - strandat 580.945 kb on - strandat 580.945 kb on - strandat 580.946 kb on + strandat 580.947 kb on - strandat 580.959 kb on - strandat 580.961 kb on + strandat 580.964 kb on + strandat 580.965 kb on - strandat 581.081 kb on - strandat 581.081 kb on - strandat 581.093 kb on + strandat 581.100 kb on - strandat 581.100 kb on - strandat 581.101 kb on + strandat 581.102 kb on - strandat 581.104 kb on + strandat 581.178 kb on - strandat 581.178 kb on - strandat 581.191 kb on + strandat 581.191 kb on + strandat 581.191 kb on + strandat 581.197 kb on + strandat 581.198 kb on - strandat 581.201 kb on - strandat 581.250 kb on - strandat 581.258 kb on - strandat 581.281 kb on - strandat 581.283 kb on - strandat 581.283 kb on - strandat 581.290 kb on + strandat 581.308 kb on + strandat 581.308 kb on + strandat 581.309 kb on - strandat 581.309 kb on - strandat 581.317 kb on + strandat 581.319 kb on + strandat 581.325 kb on + strandat 581.326 kb on - strandat 581.326 kb on - strandat 581.334 kb on - strandat 581.444 kb on + strandat 581.444 kb on + strandat 581.444 kb on + strandat 581.444 kb on + strandat 581.606 kb on - strand, within CA264_02500at 581.657 kb on + strand, within CA264_02500at 581.657 kb on + strand, within CA264_02500at 581.657 kb on + strand, within CA264_02500at 581.682 kb on + strand, within CA264_02500at 581.683 kb on - strand, within CA264_02500at 581.722 kb on - strandat 581.732 kb on - strandat 581.790 kb on + strandat 581.889 kb on + strand, within CA264_02505at 581.899 kb on + strand, within CA264_02505at 581.905 kb on + strand, within CA264_02505at 581.963 kb on - strand, within CA264_02505at 581.963 kb on - strand, within CA264_02505at 582.005 kb on - strand, within CA264_02505at 582.051 kb on + strand, within CA264_02505at 582.052 kb on - strand, within CA264_02505at 582.162 kb on - strand, within CA264_02505at 582.162 kb on - strand, within CA264_02505at 582.162 kb on - strand, within CA264_02505at 582.162 kb on - strand, within CA264_02505at 582.186 kb on - strand, within CA264_02505at 582.207 kb on + strand, within CA264_02505at 582.332 kb on + strand, within CA264_02505at 582.336 kb on + strand, within CA264_02505at 582.337 kb on - strand, within CA264_02505at 582.378 kb on - strand, within CA264_02505at 582.454 kb on + strandat 582.482 kb on - strandat 582.485 kb on + strandat 582.485 kb on + strandat 582.485 kb on + strandat 582.486 kb on - strandat 582.507 kb on - strandat 582.517 kb on - strandat 582.517 kb on - strandat 582.531 kb on + strandat 582.532 kb on - strandat 582.532 kb on - strandat 582.534 kb on + strandat 582.534 kb on + strandat 582.535 kb on - strandat 582.556 kb on - strandat 582.565 kb on - strandat 582.615 kb on + strandat 582.658 kb on - strandat 582.658 kb on - strandat 582.768 kb on - strandat 582.798 kb on + strandat 582.801 kb on - strandat 582.838 kb on + strandat 582.847 kb on - strandat 582.916 kb on - strandat 582.970 kb on - strandat 583.141 kb on - strandat 583.141 kb on - strandat 583.160 kb on + strandat 583.160 kb on + strandat 583.161 kb on - strandat 583.162 kb on + strandat 583.163 kb on - strandat 583.163 kb on - strandat 583.166 kb on + strandat 583.261 kb on - strandat 583.308 kb on + strandat 583.312 kb on + strandat 583.312 kb on + strandat 583.318 kb on + strandat 583.319 kb on - strandat 583.322 kb on + strandat 583.322 kb on + strandat 583.323 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.2 mM
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580,803 - -0.1
580,803 - +0.7
580,803 - +0.4
580,803 - -0.1
580,818 - -0.7
580,927 + +0.2
580,942 + +0.3
580,942 + -0.2
580,942 + +0.5
580,942 + -0.7
580,943 - +0.8
580,943 - +0.3
580,943 - +0.1
580,943 - +0.3
580,943 - +1.0
580,943 - -0.1
580,945 - -1.1
580,945 - -0.6
580,946 + +0.9
580,947 - +0.6
580,959 - +0.1
580,961 + -0.4
580,964 + +0.1
580,965 - -0.3
581,081 - +0.2
581,081 - -0.2
581,093 + -0.7
581,100 - +0.5
581,100 - -0.0
581,101 + -0.9
581,102 - -0.0
581,104 + +0.8
581,178 - +1.6
581,178 - -0.0
581,191 + +0.7
581,191 + +0.6
581,191 + +0.2
581,197 + -0.7
581,198 - -0.7
581,201 - +0.7
581,250 - -0.3
581,258 - -0.6
581,281 - +0.9
581,283 - +0.2
581,283 - +0.2
581,290 + -0.0
581,308 + -0.0
581,308 + +0.4
581,309 - +0.0
581,309 - -0.2
581,317 + +0.0
581,319 + +0.5
581,325 + +0.0
581,326 - +0.3
581,326 - -0.4
581,334 - +0.6
581,444 + -1.3
581,444 + +0.2
581,444 + +0.6
581,444 + +0.0
581,606 - CA264_02500 0.51 +1.0
581,657 + CA264_02500 0.70 +0.2
581,657 + CA264_02500 0.70 +0.9
581,657 + CA264_02500 0.70 -0.7
581,682 + CA264_02500 0.79 +0.8
581,683 - CA264_02500 0.79 -0.4
581,722 - -0.2
581,732 - +1.5
581,790 + +0.4
581,889 + CA264_02505 0.15 -0.2
581,899 + CA264_02505 0.17 +1.1
581,905 + CA264_02505 0.17 +0.7
581,963 - CA264_02505 0.26 +1.4
581,963 - CA264_02505 0.26 +0.2
582,005 - CA264_02505 0.32 -0.8
582,051 + CA264_02505 0.39 +0.1
582,052 - CA264_02505 0.39 +0.0
582,162 - CA264_02505 0.56 -0.1
582,162 - CA264_02505 0.56 +0.0
582,162 - CA264_02505 0.56 +0.0
582,162 - CA264_02505 0.56 +0.1
582,186 - CA264_02505 0.60 -0.1
582,207 + CA264_02505 0.63 -0.3
582,332 + CA264_02505 0.82 +1.6
582,336 + CA264_02505 0.82 -0.1
582,337 - CA264_02505 0.82 +0.1
582,378 - CA264_02505 0.88 -0.3
582,454 + -0.7
582,482 - +0.8
582,485 + -0.4
582,485 + +0.2
582,485 + +0.4
582,486 - +0.8
582,507 - +0.1
582,517 - +0.2
582,517 - +0.1
582,531 + -1.0
582,532 - -1.8
582,532 - -0.9
582,534 + -0.5
582,534 + -0.5
582,535 - -0.4
582,556 - +0.2
582,565 - +0.1
582,615 + +0.5
582,658 - -1.0
582,658 - -0.2
582,768 - +0.1
582,798 + -0.1
582,801 - +0.1
582,838 + -0.8
582,847 - -0.2
582,916 - +0.1
582,970 - -0.6
583,141 - -0.4
583,141 - -0.1
583,160 + -1.1
583,160 + -0.2
583,161 - -0.5
583,162 + -0.3
583,163 - -0.4
583,163 - -1.6
583,166 + -1.6
583,261 - -0.1
583,308 + +0.3
583,312 + +0.1
583,312 + -0.6
583,318 + -0.7
583,319 - -0.0
583,322 + -0.3
583,322 + +0.1
583,323 - -2.6

Or see this region's nucleotide sequence