Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_01655

Experiment: m.b. Chlorite 0.2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_01650 and CA264_01655 are separated by 307 nucleotidesCA264_01655 and CA264_01660 are separated by 244 nucleotides CA264_01650: CA264_01650 - YebC/PmpR family DNA-binding transcriptional regulator, at 387,882 to 388,637 _01650 CA264_01655: CA264_01655 - CoA transferase, at 388,945 to 390,054 _01655 CA264_01660: CA264_01660 - hypothetical protein, at 390,299 to 390,979 _01660 Position (kb) 388 389 390 391Strain fitness (log2 ratio) -2 -1 0 1at 387.953 kb on - strandat 388.040 kb on - strand, within CA264_01650at 388.040 kb on - strand, within CA264_01650at 388.040 kb on - strand, within CA264_01650at 388.138 kb on - strand, within CA264_01650at 388.171 kb on - strand, within CA264_01650at 388.171 kb on - strand, within CA264_01650at 388.171 kb on - strand, within CA264_01650at 388.203 kb on - strand, within CA264_01650at 388.268 kb on - strand, within CA264_01650at 388.395 kb on + strand, within CA264_01650at 388.407 kb on + strand, within CA264_01650at 388.407 kb on + strand, within CA264_01650at 388.407 kb on + strand, within CA264_01650at 388.407 kb on + strand, within CA264_01650at 388.407 kb on + strand, within CA264_01650at 388.407 kb on + strand, within CA264_01650at 388.408 kb on - strand, within CA264_01650at 388.408 kb on - strand, within CA264_01650at 388.408 kb on - strand, within CA264_01650at 388.513 kb on + strand, within CA264_01650at 388.589 kb on - strandat 388.590 kb on + strandat 388.590 kb on + strandat 388.591 kb on - strandat 388.591 kb on - strandat 388.591 kb on - strandat 388.596 kb on - strandat 388.636 kb on - strandat 388.647 kb on + strandat 388.648 kb on - strandat 388.648 kb on - strandat 388.651 kb on - strandat 388.660 kb on + strandat 388.661 kb on - strandat 388.724 kb on - strandat 388.724 kb on - strandat 388.745 kb on + strandat 388.745 kb on + strandat 388.745 kb on + strandat 388.922 kb on + strandat 388.923 kb on - strandat 388.928 kb on - strandat 388.941 kb on - strandat 388.963 kb on - strandat 389.049 kb on + strandat 389.049 kb on + strandat 389.049 kb on + strandat 389.210 kb on - strand, within CA264_01655at 389.210 kb on - strand, within CA264_01655at 389.235 kb on - strand, within CA264_01655at 389.235 kb on - strand, within CA264_01655at 389.248 kb on + strand, within CA264_01655at 389.249 kb on - strand, within CA264_01655at 389.279 kb on + strand, within CA264_01655at 389.285 kb on - strand, within CA264_01655at 389.320 kb on + strand, within CA264_01655at 389.365 kb on + strand, within CA264_01655at 389.366 kb on - strand, within CA264_01655at 389.644 kb on - strand, within CA264_01655at 389.721 kb on + strand, within CA264_01655at 389.739 kb on - strand, within CA264_01655at 389.776 kb on - strand, within CA264_01655at 389.834 kb on + strand, within CA264_01655at 389.834 kb on + strand, within CA264_01655at 390.002 kb on + strandat 390.053 kb on - strandat 390.057 kb on + strandat 390.057 kb on + strandat 390.208 kb on + strandat 390.213 kb on - strandat 390.213 kb on - strandat 390.229 kb on + strandat 390.234 kb on + strandat 390.272 kb on - strandat 390.272 kb on - strandat 390.319 kb on + strandat 390.319 kb on + strandat 390.319 kb on + strandat 390.394 kb on + strand, within CA264_01660at 390.394 kb on + strand, within CA264_01660at 390.394 kb on + strand, within CA264_01660at 390.395 kb on - strand, within CA264_01660at 390.403 kb on + strand, within CA264_01660at 390.483 kb on + strand, within CA264_01660at 390.483 kb on + strand, within CA264_01660at 390.569 kb on + strand, within CA264_01660at 390.595 kb on - strand, within CA264_01660at 390.595 kb on - strand, within CA264_01660at 390.595 kb on - strand, within CA264_01660at 390.628 kb on + strand, within CA264_01660at 390.639 kb on - strand, within CA264_01660at 390.665 kb on + strand, within CA264_01660at 390.690 kb on - strand, within CA264_01660at 390.884 kb on - strand, within CA264_01660

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.2 mM
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387,953 - -0.0
388,040 - CA264_01650 0.21 -1.1
388,040 - CA264_01650 0.21 +0.2
388,040 - CA264_01650 0.21 -0.7
388,138 - CA264_01650 0.34 -1.2
388,171 - CA264_01650 0.38 +0.2
388,171 - CA264_01650 0.38 -0.3
388,171 - CA264_01650 0.38 -0.0
388,203 - CA264_01650 0.42 -0.3
388,268 - CA264_01650 0.51 +0.5
388,395 + CA264_01650 0.68 +1.0
388,407 + CA264_01650 0.69 -0.3
388,407 + CA264_01650 0.69 -0.3
388,407 + CA264_01650 0.69 +0.1
388,407 + CA264_01650 0.69 -1.9
388,407 + CA264_01650 0.69 -0.5
388,407 + CA264_01650 0.69 -0.0
388,408 - CA264_01650 0.70 -2.2
388,408 - CA264_01650 0.70 -0.9
388,408 - CA264_01650 0.70 +0.7
388,513 + CA264_01650 0.83 -0.4
388,589 - -0.6
388,590 + -0.5
388,590 + -0.2
388,591 - -0.3
388,591 - -0.4
388,591 - -0.5
388,596 - -0.4
388,636 - +1.1
388,647 + -1.0
388,648 - -0.4
388,648 - +0.8
388,651 - -0.6
388,660 + -1.1
388,661 - -0.1
388,724 - +1.4
388,724 - -0.1
388,745 + +0.7
388,745 + +0.1
388,745 + +0.9
388,922 + +1.3
388,923 - -0.3
388,928 - -0.2
388,941 - +0.9
388,963 - -0.4
389,049 + -1.2
389,049 + +0.3
389,049 + +0.3
389,210 - CA264_01655 0.24 +0.1
389,210 - CA264_01655 0.24 -0.4
389,235 - CA264_01655 0.26 -0.2
389,235 - CA264_01655 0.26 +0.4
389,248 + CA264_01655 0.27 +1.5
389,249 - CA264_01655 0.27 +0.0
389,279 + CA264_01655 0.30 +1.0
389,285 - CA264_01655 0.31 +0.0
389,320 + CA264_01655 0.34 +0.2
389,365 + CA264_01655 0.38 +1.0
389,366 - CA264_01655 0.38 -0.7
389,644 - CA264_01655 0.63 +0.2
389,721 + CA264_01655 0.70 -0.2
389,739 - CA264_01655 0.72 +0.2
389,776 - CA264_01655 0.75 -0.3
389,834 + CA264_01655 0.80 +0.2
389,834 + CA264_01655 0.80 +0.3
390,002 + -0.4
390,053 - -1.2
390,057 + +1.3
390,057 + -0.9
390,208 + -0.3
390,213 - -0.2
390,213 - -0.6
390,229 + +1.3
390,234 + +0.0
390,272 - -0.5
390,272 - +0.4
390,319 + -0.3
390,319 + +0.3
390,319 + -1.2
390,394 + CA264_01660 0.14 -0.4
390,394 + CA264_01660 0.14 +0.5
390,394 + CA264_01660 0.14 -0.2
390,395 - CA264_01660 0.14 -0.2
390,403 + CA264_01660 0.15 -0.0
390,483 + CA264_01660 0.27 -1.4
390,483 + CA264_01660 0.27 -0.2
390,569 + CA264_01660 0.40 -0.3
390,595 - CA264_01660 0.43 -0.1
390,595 - CA264_01660 0.43 -1.7
390,595 - CA264_01660 0.43 -0.0
390,628 + CA264_01660 0.48 -0.4
390,639 - CA264_01660 0.50 -0.7
390,665 + CA264_01660 0.54 -0.4
390,690 - CA264_01660 0.57 -0.3
390,884 - CA264_01660 0.86 +0.1

Or see this region's nucleotide sequence