Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_00570

Experiment: m.b. Chlorite 0.2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_00560 and CA264_00565 are separated by 59 nucleotidesCA264_00565 and CA264_00570 are separated by 219 nucleotidesCA264_00570 and CA264_00575 are separated by 122 nucleotides CA264_00560: CA264_00560 - hypothetical protein, at 124,527 to 124,868 _00560 CA264_00565: CA264_00565 - hypothetical protein, at 124,928 to 125,161 _00565 CA264_00570: CA264_00570 - methionine--tRNA ligase, at 125,381 to 127,420 _00570 CA264_00575: CA264_00575 - MFS transporter, at 127,543 to 128,811 _00575 Position (kb) 125 126 127 128Strain fitness (log2 ratio) -2 -1 0 1at 124.407 kb on - strandat 124.463 kb on - strandat 124.463 kb on - strandat 124.468 kb on + strandat 124.469 kb on - strandat 124.469 kb on - strandat 124.469 kb on - strandat 124.473 kb on + strandat 124.475 kb on + strandat 124.479 kb on + strandat 124.479 kb on + strandat 124.504 kb on + strandat 124.504 kb on + strandat 124.505 kb on - strandat 124.505 kb on - strandat 124.537 kb on - strandat 124.537 kb on - strandat 124.543 kb on + strandat 124.543 kb on + strandat 124.543 kb on + strandat 124.543 kb on + strandat 124.543 kb on + strandat 124.543 kb on + strandat 124.543 kb on + strandat 124.544 kb on - strandat 124.544 kb on - strandat 124.544 kb on - strandat 124.545 kb on + strandat 124.545 kb on + strandat 124.545 kb on + strandat 124.545 kb on + strandat 124.545 kb on + strandat 124.546 kb on - strandat 124.546 kb on - strandat 124.546 kb on - strandat 124.546 kb on - strandat 124.546 kb on - strandat 124.546 kb on - strandat 124.546 kb on - strandat 124.548 kb on - strandat 124.565 kb on - strand, within CA264_00560at 124.650 kb on + strand, within CA264_00560at 124.821 kb on + strand, within CA264_00560at 124.821 kb on + strand, within CA264_00560at 124.822 kb on - strand, within CA264_00560at 124.822 kb on - strand, within CA264_00560at 124.822 kb on - strand, within CA264_00560at 124.833 kb on + strand, within CA264_00560at 124.834 kb on - strandat 124.894 kb on - strandat 125.012 kb on + strand, within CA264_00565at 125.016 kb on + strand, within CA264_00565at 125.146 kb on + strandat 125.147 kb on - strandat 125.161 kb on + strandat 125.161 kb on + strandat 125.162 kb on - strandat 125.162 kb on - strandat 125.226 kb on - strandat 125.226 kb on - strandat 125.292 kb on + strandat 125.293 kb on - strandat 125.301 kb on - strandat 125.302 kb on + strandat 125.303 kb on - strandat 125.303 kb on - strandat 125.351 kb on - strandat 125.351 kb on - strandat 125.359 kb on - strandat 127.102 kb on + strand, within CA264_00570at 127.102 kb on + strand, within CA264_00570at 127.102 kb on + strand, within CA264_00570at 127.443 kb on + strandat 127.496 kb on + strandat 127.497 kb on - strandat 127.517 kb on - strandat 127.518 kb on + strandat 127.519 kb on - strandat 127.519 kb on - strandat 127.519 kb on - strandat 127.522 kb on + strandat 127.522 kb on + strandat 127.523 kb on - strandat 127.523 kb on - strandat 127.523 kb on - strandat 127.527 kb on + strandat 127.610 kb on - strandat 127.628 kb on + strandat 127.628 kb on + strandat 127.758 kb on - strand, within CA264_00575at 127.769 kb on + strand, within CA264_00575at 127.769 kb on + strand, within CA264_00575at 127.770 kb on - strand, within CA264_00575at 127.770 kb on - strand, within CA264_00575at 127.807 kb on - strand, within CA264_00575at 127.845 kb on + strand, within CA264_00575at 127.846 kb on - strand, within CA264_00575at 127.846 kb on - strand, within CA264_00575at 127.875 kb on + strand, within CA264_00575at 127.879 kb on + strand, within CA264_00575at 127.924 kb on + strand, within CA264_00575at 127.942 kb on - strand, within CA264_00575at 127.977 kb on - strand, within CA264_00575at 128.055 kb on + strand, within CA264_00575at 128.055 kb on + strand, within CA264_00575at 128.056 kb on - strand, within CA264_00575at 128.056 kb on - strand, within CA264_00575at 128.056 kb on - strand, within CA264_00575at 128.057 kb on + strand, within CA264_00575at 128.057 kb on + strand, within CA264_00575at 128.057 kb on + strand, within CA264_00575at 128.058 kb on - strand, within CA264_00575at 128.058 kb on - strand, within CA264_00575at 128.072 kb on + strand, within CA264_00575at 128.140 kb on + strand, within CA264_00575at 128.307 kb on - strand, within CA264_00575at 128.311 kb on + strand, within CA264_00575at 128.415 kb on - strand, within CA264_00575

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.2 mM
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124,407 - -0.8
124,463 - +0.4
124,463 - -0.3
124,468 + +0.0
124,469 - +0.4
124,469 - -0.1
124,469 - -0.4
124,473 + -0.4
124,475 + -0.2
124,479 + -0.3
124,479 + +0.5
124,504 + +0.4
124,504 + -0.4
124,505 - +0.5
124,505 - -0.8
124,537 - -1.2
124,537 - -0.1
124,543 + -0.4
124,543 + -0.4
124,543 + -0.4
124,543 + -0.8
124,543 + +0.5
124,543 + -0.6
124,543 + -0.2
124,544 - -0.1
124,544 - -1.2
124,544 - +0.1
124,545 + -2.2
124,545 + +0.8
124,545 + +1.3
124,545 + -1.0
124,545 + -0.4
124,546 - +0.3
124,546 - +1.2
124,546 - -0.6
124,546 - -0.0
124,546 - +0.4
124,546 - +0.3
124,546 - -0.3
124,548 - -0.4
124,565 - CA264_00560 0.11 +0.1
124,650 + CA264_00560 0.36 +0.5
124,821 + CA264_00560 0.86 +0.8
124,821 + CA264_00560 0.86 -1.6
124,822 - CA264_00560 0.86 -0.2
124,822 - CA264_00560 0.86 +0.3
124,822 - CA264_00560 0.86 +0.1
124,833 + CA264_00560 0.89 -2.2
124,834 - +0.5
124,894 - -1.1
125,012 + CA264_00565 0.36 -1.4
125,016 + CA264_00565 0.38 -1.4
125,146 + -0.7
125,147 - -0.1
125,161 + +0.2
125,161 + -0.5
125,162 - -0.2
125,162 - -0.2
125,226 - -1.1
125,226 - -0.1
125,292 + -0.4
125,293 - -0.2
125,301 - -0.3
125,302 + -0.8
125,303 - +0.7
125,303 - +0.4
125,351 - -0.3
125,351 - -0.1
125,359 - -1.1
127,102 + CA264_00570 0.84 +0.7
127,102 + CA264_00570 0.84 -0.2
127,102 + CA264_00570 0.84 +0.2
127,443 + -0.8
127,496 + -0.2
127,497 - -0.1
127,517 - +0.2
127,518 + +0.1
127,519 - -1.5
127,519 - -0.6
127,519 - +1.3
127,522 + -0.3
127,522 + -0.2
127,523 - -0.2
127,523 - -0.5
127,523 - -0.3
127,527 + -0.0
127,610 - -2.5
127,628 + -0.3
127,628 + +0.6
127,758 - CA264_00575 0.17 -0.1
127,769 + CA264_00575 0.18 -0.3
127,769 + CA264_00575 0.18 -0.3
127,770 - CA264_00575 0.18 -0.3
127,770 - CA264_00575 0.18 -0.9
127,807 - CA264_00575 0.21 -0.4
127,845 + CA264_00575 0.24 +0.1
127,846 - CA264_00575 0.24 -1.0
127,846 - CA264_00575 0.24 -0.1
127,875 + CA264_00575 0.26 -0.2
127,879 + CA264_00575 0.26 -0.1
127,924 + CA264_00575 0.30 -0.7
127,942 - CA264_00575 0.31 -0.0
127,977 - CA264_00575 0.34 -0.1
128,055 + CA264_00575 0.40 -1.0
128,055 + CA264_00575 0.40 +0.2
128,056 - CA264_00575 0.40 -0.0
128,056 - CA264_00575 0.40 +0.2
128,056 - CA264_00575 0.40 -1.3
128,057 + CA264_00575 0.41 -0.1
128,057 + CA264_00575 0.41 +1.0
128,057 + CA264_00575 0.41 +0.5
128,058 - CA264_00575 0.41 +0.7
128,058 - CA264_00575 0.41 -1.3
128,072 + CA264_00575 0.42 +1.0
128,140 + CA264_00575 0.47 -0.3
128,307 - CA264_00575 0.60 -0.8
128,311 + CA264_00575 0.61 +0.9
128,415 - CA264_00575 0.69 -0.6

Or see this region's nucleotide sequence