Experiment: Formate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS27475 and ABIE40_RS27480 are separated by 88 nucleotides ABIE40_RS27480 and ABIE40_RS27485 are separated by 56 nucleotides ABIE40_RS27485 and ABIE40_RS27490 are separated by 362 nucleotides ABIE40_RS27490 and ABIE40_RS27495 are separated by 22 nucleotides
ABIE40_RS27475: ABIE40_RS27475 - PRC-barrel domain-containing protein, at 205,047 to 205,343
_RS27475
ABIE40_RS27480: ABIE40_RS27480 - response regulator, at 205,432 to 205,833
_RS27480
ABIE40_RS27485: ABIE40_RS27485 - response regulator, at 205,890 to 206,249
_RS27485
ABIE40_RS27490: ABIE40_RS27490 - hypothetical protein, at 206,612 to 206,791
_RS27490
ABIE40_RS27495: ABIE40_RS27495 - response regulator, at 206,814 to 207,353
_RS27495
Position (kb) 205
206
207 Strain fitness (log2 ratio) -2
-1
0
1
2 at 204.906 kb on + strand at 204.907 kb on - strand at 204.929 kb on + strand at 204.971 kb on + strand at 204.972 kb on - strand at 205.055 kb on + strand at 205.055 kb on + strand at 205.056 kb on - strand at 205.088 kb on - strand, within ABIE40_RS27475 at 205.088 kb on - strand, within ABIE40_RS27475 at 205.088 kb on - strand, within ABIE40_RS27475 at 205.385 kb on + strand at 205.386 kb on - strand at 205.409 kb on + strand at 205.409 kb on + strand at 205.409 kb on + strand at 205.409 kb on + strand at 205.409 kb on + strand at 205.410 kb on - strand at 205.410 kb on - strand at 205.439 kb on - strand at 205.439 kb on - strand at 205.449 kb on + strand at 205.449 kb on + strand at 205.540 kb on + strand, within ABIE40_RS27480 at 205.541 kb on - strand, within ABIE40_RS27480 at 205.541 kb on - strand, within ABIE40_RS27480 at 205.541 kb on - strand, within ABIE40_RS27480 at 205.541 kb on - strand, within ABIE40_RS27480 at 205.541 kb on - strand, within ABIE40_RS27480 at 205.794 kb on + strand at 205.794 kb on + strand at 205.794 kb on + strand at 205.795 kb on - strand at 205.795 kb on - strand at 205.795 kb on - strand at 205.892 kb on - strand at 205.892 kb on - strand at 205.976 kb on + strand, within ABIE40_RS27485 at 206.036 kb on + strand, within ABIE40_RS27485 at 206.036 kb on + strand, within ABIE40_RS27485 at 206.167 kb on - strand, within ABIE40_RS27485 at 206.167 kb on - strand, within ABIE40_RS27485 at 206.261 kb on - strand at 206.419 kb on - strand at 206.419 kb on - strand at 206.512 kb on + strand at 206.512 kb on + strand at 206.513 kb on - strand at 206.654 kb on + strand, within ABIE40_RS27490 at 206.685 kb on + strand, within ABIE40_RS27490 at 206.686 kb on - strand, within ABIE40_RS27490 at 206.773 kb on - strand, within ABIE40_RS27490 at 206.978 kb on + strand, within ABIE40_RS27495 at 206.990 kb on + strand, within ABIE40_RS27495 at 206.990 kb on + strand, within ABIE40_RS27495 at 206.990 kb on + strand, within ABIE40_RS27495 at 206.990 kb on + strand, within ABIE40_RS27495 at 206.991 kb on - strand, within ABIE40_RS27495 at 206.991 kb on - strand, within ABIE40_RS27495 at 206.991 kb on - strand, within ABIE40_RS27495 at 206.994 kb on + strand, within ABIE40_RS27495 at 206.994 kb on + strand, within ABIE40_RS27495 at 206.994 kb on + strand, within ABIE40_RS27495 at 206.994 kb on + strand, within ABIE40_RS27495 at 206.995 kb on - strand, within ABIE40_RS27495 at 206.995 kb on - strand, within ABIE40_RS27495 at 206.995 kb on - strand, within ABIE40_RS27495 at 206.997 kb on - strand, within ABIE40_RS27495 at 207.034 kb on - strand, within ABIE40_RS27495 at 207.034 kb on - strand, within ABIE40_RS27495 at 207.105 kb on - strand, within ABIE40_RS27495 at 207.143 kb on + strand, within ABIE40_RS27495 at 207.144 kb on - strand, within ABIE40_RS27495 at 207.224 kb on + strand, within ABIE40_RS27495 at 207.225 kb on - strand, within ABIE40_RS27495
Per-strain Table
Position Strand Gene LocusTag Fraction Formate (C) remove 204,906 + -0.3 204,907 - +2.0 204,929 + -0.2 204,971 + -0.1 204,972 - +0.6 205,055 + +0.6 205,055 + +0.7 205,056 - -0.4 205,088 - ABIE40_RS27475 0.14 -0.7 205,088 - ABIE40_RS27475 0.14 +0.0 205,088 - ABIE40_RS27475 0.14 -0.4 205,385 + -0.2 205,386 - -0.8 205,409 + -0.4 205,409 + +0.6 205,409 + +1.2 205,409 + -0.6 205,409 + -1.0 205,410 - -0.9 205,410 - +1.1 205,439 - -1.1 205,439 - +0.6 205,449 + -2.5 205,449 + +0.0 205,540 + ABIE40_RS27480 0.27 +1.4 205,541 - ABIE40_RS27480 0.27 +0.4 205,541 - ABIE40_RS27480 0.27 -0.5 205,541 - ABIE40_RS27480 0.27 -0.4 205,541 - ABIE40_RS27480 0.27 -1.0 205,541 - ABIE40_RS27480 0.27 -0.4 205,794 + -2.0 205,794 + +0.5 205,794 + -0.5 205,795 - -2.6 205,795 - -0.3 205,795 - -0.9 205,892 - -0.6 205,892 - +0.4 205,976 + ABIE40_RS27485 0.24 +1.2 206,036 + ABIE40_RS27485 0.41 -0.7 206,036 + ABIE40_RS27485 0.41 +0.3 206,167 - ABIE40_RS27485 0.77 -0.8 206,167 - ABIE40_RS27485 0.77 -1.0 206,261 - +1.6 206,419 - -0.7 206,419 - -0.8 206,512 + -0.3 206,512 + +1.6 206,513 - -0.9 206,654 + ABIE40_RS27490 0.23 -1.0 206,685 + ABIE40_RS27490 0.41 +0.5 206,686 - ABIE40_RS27490 0.41 +0.4 206,773 - ABIE40_RS27490 0.89 -0.5 206,978 + ABIE40_RS27495 0.30 +0.4 206,990 + ABIE40_RS27495 0.33 -0.7 206,990 + ABIE40_RS27495 0.33 -0.6 206,990 + ABIE40_RS27495 0.33 -0.6 206,990 + ABIE40_RS27495 0.33 +1.8 206,991 - ABIE40_RS27495 0.33 +0.3 206,991 - ABIE40_RS27495 0.33 -0.0 206,991 - ABIE40_RS27495 0.33 +0.0 206,994 + ABIE40_RS27495 0.33 +0.1 206,994 + ABIE40_RS27495 0.33 +1.2 206,994 + ABIE40_RS27495 0.33 +0.0 206,994 + ABIE40_RS27495 0.33 +0.7 206,995 - ABIE40_RS27495 0.34 -1.1 206,995 - ABIE40_RS27495 0.34 +0.1 206,995 - ABIE40_RS27495 0.34 -0.1 206,997 - ABIE40_RS27495 0.34 -0.3 207,034 - ABIE40_RS27495 0.41 -0.9 207,034 - ABIE40_RS27495 0.41 -0.2 207,105 - ABIE40_RS27495 0.54 -1.3 207,143 + ABIE40_RS27495 0.61 +2.0 207,144 - ABIE40_RS27495 0.61 +0.4 207,224 + ABIE40_RS27495 0.76 +0.9 207,225 - ABIE40_RS27495 0.76 -0.6
Or see this region's nucleotide sequence