Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS25565

Experiment: Formate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS25560 and ABIE40_RS25565 are separated by 4 nucleotidesABIE40_RS25565 and ABIE40_RS25570 are separated by 207 nucleotides ABIE40_RS25560: ABIE40_RS25560 - nitrite reductase large subunit NirB, at 1,288,178 to 1,290,628 _RS25560 ABIE40_RS25565: ABIE40_RS25565 - nitrite reductase small subunit NirD, at 1,290,633 to 1,290,968 _RS25565 ABIE40_RS25570: ABIE40_RS25570 - nitrate reductase, at 1,291,176 to 1,293,842 _RS25570 Position (kb) 1290 1291Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1289.765 kb on + strand, within ABIE40_RS25560at 1289.765 kb on + strand, within ABIE40_RS25560at 1289.765 kb on + strand, within ABIE40_RS25560at 1289.765 kb on + strand, within ABIE40_RS25560at 1289.765 kb on + strand, within ABIE40_RS25560at 1289.765 kb on + strand, within ABIE40_RS25560at 1289.765 kb on + strand, within ABIE40_RS25560at 1289.766 kb on - strand, within ABIE40_RS25560at 1289.766 kb on - strand, within ABIE40_RS25560at 1289.768 kb on + strand, within ABIE40_RS25560at 1289.769 kb on - strand, within ABIE40_RS25560at 1289.769 kb on - strand, within ABIE40_RS25560at 1289.769 kb on - strand, within ABIE40_RS25560at 1289.769 kb on - strand, within ABIE40_RS25560at 1289.796 kb on - strand, within ABIE40_RS25560at 1289.796 kb on - strand, within ABIE40_RS25560at 1289.808 kb on - strand, within ABIE40_RS25560at 1289.864 kb on + strand, within ABIE40_RS25560at 1289.864 kb on + strand, within ABIE40_RS25560at 1289.865 kb on - strand, within ABIE40_RS25560at 1289.865 kb on - strand, within ABIE40_RS25560at 1289.865 kb on - strand, within ABIE40_RS25560at 1289.865 kb on - strand, within ABIE40_RS25560at 1289.871 kb on - strand, within ABIE40_RS25560at 1289.949 kb on + strand, within ABIE40_RS25560at 1289.949 kb on + strand, within ABIE40_RS25560at 1289.984 kb on + strand, within ABIE40_RS25560at 1290.065 kb on + strand, within ABIE40_RS25560at 1290.066 kb on - strand, within ABIE40_RS25560at 1290.370 kb on + strand, within ABIE40_RS25560at 1290.371 kb on - strand, within ABIE40_RS25560at 1290.371 kb on - strand, within ABIE40_RS25560at 1290.392 kb on + strandat 1290.392 kb on + strandat 1290.392 kb on + strandat 1290.393 kb on - strandat 1290.393 kb on - strandat 1290.411 kb on - strandat 1290.425 kb on + strandat 1290.425 kb on + strandat 1290.425 kb on + strandat 1290.426 kb on - strandat 1290.426 kb on - strandat 1290.426 kb on - strandat 1290.501 kb on - strandat 1290.503 kb on + strandat 1290.503 kb on + strandat 1290.503 kb on + strandat 1290.504 kb on - strandat 1290.638 kb on + strandat 1290.639 kb on - strandat 1290.639 kb on - strandat 1290.662 kb on + strandat 1290.663 kb on - strandat 1290.928 kb on + strand, within ABIE40_RS25565at 1290.928 kb on + strand, within ABIE40_RS25565at 1290.933 kb on - strand, within ABIE40_RS25565at 1290.991 kb on - strandat 1290.991 kb on - strandat 1290.991 kb on - strandat 1290.991 kb on - strandat 1291.141 kb on + strandat 1291.206 kb on + strandat 1291.467 kb on + strand, within ABIE40_RS25570at 1291.467 kb on + strand, within ABIE40_RS25570at 1291.467 kb on + strand, within ABIE40_RS25570at 1291.467 kb on + strand, within ABIE40_RS25570at 1291.467 kb on + strand, within ABIE40_RS25570at 1291.468 kb on - strand, within ABIE40_RS25570at 1291.468 kb on - strand, within ABIE40_RS25570at 1291.468 kb on - strand, within ABIE40_RS25570at 1291.497 kb on + strand, within ABIE40_RS25570at 1291.497 kb on + strand, within ABIE40_RS25570at 1291.497 kb on + strand, within ABIE40_RS25570at 1291.497 kb on + strand, within ABIE40_RS25570at 1291.497 kb on + strand, within ABIE40_RS25570at 1291.497 kb on + strand, within ABIE40_RS25570at 1291.498 kb on - strand, within ABIE40_RS25570at 1291.498 kb on - strand, within ABIE40_RS25570at 1291.498 kb on - strand, within ABIE40_RS25570at 1291.498 kb on - strand, within ABIE40_RS25570at 1291.500 kb on + strand, within ABIE40_RS25570at 1291.500 kb on + strand, within ABIE40_RS25570at 1291.500 kb on + strand, within ABIE40_RS25570at 1291.500 kb on + strand, within ABIE40_RS25570at 1291.500 kb on + strand, within ABIE40_RS25570at 1291.501 kb on - strand, within ABIE40_RS25570at 1291.501 kb on - strand, within ABIE40_RS25570at 1291.501 kb on - strand, within ABIE40_RS25570at 1291.501 kb on - strand, within ABIE40_RS25570at 1291.614 kb on - strand, within ABIE40_RS25570at 1291.614 kb on - strand, within ABIE40_RS25570at 1291.629 kb on + strand, within ABIE40_RS25570at 1291.629 kb on + strand, within ABIE40_RS25570at 1291.629 kb on + strand, within ABIE40_RS25570at 1291.629 kb on + strand, within ABIE40_RS25570at 1291.629 kb on + strand, within ABIE40_RS25570at 1291.630 kb on - strand, within ABIE40_RS25570at 1291.630 kb on - strand, within ABIE40_RS25570at 1291.630 kb on - strand, within ABIE40_RS25570at 1291.630 kb on - strand, within ABIE40_RS25570at 1291.630 kb on - strand, within ABIE40_RS25570at 1291.630 kb on - strand, within ABIE40_RS25570at 1291.630 kb on - strand, within ABIE40_RS25570at 1291.787 kb on - strand, within ABIE40_RS25570at 1291.884 kb on + strand, within ABIE40_RS25570at 1291.884 kb on + strand, within ABIE40_RS25570at 1291.885 kb on - strand, within ABIE40_RS25570at 1291.885 kb on - strand, within ABIE40_RS25570at 1291.885 kb on - strand, within ABIE40_RS25570at 1291.896 kb on + strand, within ABIE40_RS25570at 1291.897 kb on - strand, within ABIE40_RS25570at 1291.897 kb on - strand, within ABIE40_RS25570at 1291.899 kb on - strand, within ABIE40_RS25570at 1291.899 kb on - strand, within ABIE40_RS25570at 1291.965 kb on - strand, within ABIE40_RS25570

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate (C)
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1,289,765 + ABIE40_RS25560 0.65 +0.6
1,289,765 + ABIE40_RS25560 0.65 -0.1
1,289,765 + ABIE40_RS25560 0.65 +1.0
1,289,765 + ABIE40_RS25560 0.65 +0.3
1,289,765 + ABIE40_RS25560 0.65 -1.2
1,289,765 + ABIE40_RS25560 0.65 -0.9
1,289,765 + ABIE40_RS25560 0.65 -2.4
1,289,766 - ABIE40_RS25560 0.65 -0.2
1,289,766 - ABIE40_RS25560 0.65 -0.7
1,289,768 + ABIE40_RS25560 0.65 -0.9
1,289,769 - ABIE40_RS25560 0.65 -0.3
1,289,769 - ABIE40_RS25560 0.65 +0.0
1,289,769 - ABIE40_RS25560 0.65 -0.2
1,289,769 - ABIE40_RS25560 0.65 +0.0
1,289,796 - ABIE40_RS25560 0.66 -0.4
1,289,796 - ABIE40_RS25560 0.66 -1.1
1,289,808 - ABIE40_RS25560 0.67 +3.6
1,289,864 + ABIE40_RS25560 0.69 +0.1
1,289,864 + ABIE40_RS25560 0.69 -0.3
1,289,865 - ABIE40_RS25560 0.69 -0.3
1,289,865 - ABIE40_RS25560 0.69 +0.7
1,289,865 - ABIE40_RS25560 0.69 -1.0
1,289,865 - ABIE40_RS25560 0.69 -0.4
1,289,871 - ABIE40_RS25560 0.69 +0.9
1,289,949 + ABIE40_RS25560 0.72 -0.3
1,289,949 + ABIE40_RS25560 0.72 -0.1
1,289,984 + ABIE40_RS25560 0.74 -0.9
1,290,065 + ABIE40_RS25560 0.77 -1.7
1,290,066 - ABIE40_RS25560 0.77 -0.7
1,290,370 + ABIE40_RS25560 0.89 -1.0
1,290,371 - ABIE40_RS25560 0.89 -0.0
1,290,371 - ABIE40_RS25560 0.89 +0.4
1,290,392 + -0.6
1,290,392 + -0.9
1,290,392 + +0.1
1,290,393 - -1.8
1,290,393 - -1.3
1,290,411 - -0.3
1,290,425 + -2.1
1,290,425 + -0.5
1,290,425 + -1.8
1,290,426 - -0.6
1,290,426 - -1.9
1,290,426 - +0.1
1,290,501 - -0.9
1,290,503 + +1.3
1,290,503 + -0.6
1,290,503 + -0.6
1,290,504 - -1.0
1,290,638 + -1.7
1,290,639 - -1.0
1,290,639 - +0.4
1,290,662 + +0.0
1,290,663 - -1.2
1,290,928 + ABIE40_RS25565 0.88 +0.8
1,290,928 + ABIE40_RS25565 0.88 +0.7
1,290,933 - ABIE40_RS25565 0.89 -0.2
1,290,991 - -0.5
1,290,991 - -0.9
1,290,991 - -0.3
1,290,991 - -0.4
1,291,141 + +1.0
1,291,206 + +1.1
1,291,467 + ABIE40_RS25570 0.11 +1.2
1,291,467 + ABIE40_RS25570 0.11 -0.3
1,291,467 + ABIE40_RS25570 0.11 +0.6
1,291,467 + ABIE40_RS25570 0.11 -1.3
1,291,467 + ABIE40_RS25570 0.11 -0.5
1,291,468 - ABIE40_RS25570 0.11 -0.2
1,291,468 - ABIE40_RS25570 0.11 +0.9
1,291,468 - ABIE40_RS25570 0.11 -0.3
1,291,497 + ABIE40_RS25570 0.12 -1.3
1,291,497 + ABIE40_RS25570 0.12 +0.6
1,291,497 + ABIE40_RS25570 0.12 -0.6
1,291,497 + ABIE40_RS25570 0.12 -2.1
1,291,497 + ABIE40_RS25570 0.12 +0.3
1,291,497 + ABIE40_RS25570 0.12 -1.7
1,291,498 - ABIE40_RS25570 0.12 +0.5
1,291,498 - ABIE40_RS25570 0.12 +0.0
1,291,498 - ABIE40_RS25570 0.12 -2.7
1,291,498 - ABIE40_RS25570 0.12 -0.9
1,291,500 + ABIE40_RS25570 0.12 -0.7
1,291,500 + ABIE40_RS25570 0.12 +0.4
1,291,500 + ABIE40_RS25570 0.12 -0.7
1,291,500 + ABIE40_RS25570 0.12 -1.0
1,291,500 + ABIE40_RS25570 0.12 -0.2
1,291,501 - ABIE40_RS25570 0.12 -0.4
1,291,501 - ABIE40_RS25570 0.12 +2.0
1,291,501 - ABIE40_RS25570 0.12 -0.3
1,291,501 - ABIE40_RS25570 0.12 +0.9
1,291,614 - ABIE40_RS25570 0.16 +0.1
1,291,614 - ABIE40_RS25570 0.16 -0.6
1,291,629 + ABIE40_RS25570 0.17 +0.5
1,291,629 + ABIE40_RS25570 0.17 +1.0
1,291,629 + ABIE40_RS25570 0.17 +0.7
1,291,629 + ABIE40_RS25570 0.17 -0.7
1,291,629 + ABIE40_RS25570 0.17 +0.2
1,291,630 - ABIE40_RS25570 0.17 -0.6
1,291,630 - ABIE40_RS25570 0.17 +0.6
1,291,630 - ABIE40_RS25570 0.17 +0.2
1,291,630 - ABIE40_RS25570 0.17 -0.3
1,291,630 - ABIE40_RS25570 0.17 +0.3
1,291,630 - ABIE40_RS25570 0.17 -0.1
1,291,630 - ABIE40_RS25570 0.17 +0.8
1,291,787 - ABIE40_RS25570 0.23 -0.2
1,291,884 + ABIE40_RS25570 0.27 +0.7
1,291,884 + ABIE40_RS25570 0.27 -0.1
1,291,885 - ABIE40_RS25570 0.27 +1.5
1,291,885 - ABIE40_RS25570 0.27 -0.1
1,291,885 - ABIE40_RS25570 0.27 -0.4
1,291,896 + ABIE40_RS25570 0.27 -0.1
1,291,897 - ABIE40_RS25570 0.27 +2.4
1,291,897 - ABIE40_RS25570 0.27 -0.3
1,291,899 - ABIE40_RS25570 0.27 -0.0
1,291,899 - ABIE40_RS25570 0.27 +0.6
1,291,965 - ABIE40_RS25570 0.30 -0.5

Or see this region's nucleotide sequence