Experiment: Formate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS23185 and ABIE40_RS23190 are separated by 100 nucleotides ABIE40_RS23190 and ABIE40_RS23195 are separated by 98 nucleotides
ABIE40_RS23185: ABIE40_RS23185 - acyl-CoA dehydrogenase family protein, at 785,982 to 787,109
_RS23185
ABIE40_RS23190: ABIE40_RS23190 - FCD domain-containing protein, at 787,210 to 787,899
_RS23190
ABIE40_RS23195: ABIE40_RS23195 - isocitrate/isopropylmalate family dehydrogenase, at 787,998 to 789,068
_RS23195
Position (kb) 787
788 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 786.417 kb on + strand, within ABIE40_RS23185 at 786.417 kb on + strand, within ABIE40_RS23185 at 786.417 kb on + strand, within ABIE40_RS23185 at 786.417 kb on + strand, within ABIE40_RS23185 at 786.417 kb on + strand, within ABIE40_RS23185 at 786.418 kb on - strand, within ABIE40_RS23185 at 786.418 kb on - strand, within ABIE40_RS23185 at 786.418 kb on - strand, within ABIE40_RS23185 at 786.418 kb on - strand, within ABIE40_RS23185 at 786.418 kb on - strand, within ABIE40_RS23185 at 786.599 kb on + strand, within ABIE40_RS23185 at 786.599 kb on + strand, within ABIE40_RS23185 at 786.600 kb on - strand, within ABIE40_RS23185 at 786.766 kb on - strand, within ABIE40_RS23185 at 786.996 kb on + strand, within ABIE40_RS23185 at 786.996 kb on + strand, within ABIE40_RS23185 at 787.002 kb on + strand at 787.002 kb on + strand at 787.002 kb on + strand at 787.002 kb on + strand at 787.002 kb on + strand at 787.002 kb on + strand at 787.002 kb on + strand at 787.002 kb on + strand at 787.002 kb on + strand at 787.003 kb on - strand at 787.003 kb on - strand at 787.003 kb on - strand at 787.003 kb on - strand at 787.003 kb on - strand at 787.033 kb on - strand at 787.059 kb on + strand at 787.059 kb on + strand at 787.059 kb on + strand at 787.059 kb on + strand at 787.060 kb on - strand at 787.060 kb on - strand at 787.060 kb on - strand at 787.060 kb on - strand at 787.060 kb on - strand at 787.060 kb on - strand at 787.078 kb on + strand at 787.078 kb on + strand at 787.079 kb on - strand at 787.167 kb on + strand at 787.168 kb on - strand at 787.168 kb on - strand at 787.170 kb on + strand at 787.170 kb on + strand at 787.170 kb on + strand at 787.170 kb on + strand at 787.170 kb on + strand at 787.171 kb on - strand at 787.171 kb on - strand at 787.171 kb on - strand at 787.171 kb on - strand at 787.171 kb on - strand at 787.617 kb on + strand, within ABIE40_RS23190 at 787.617 kb on + strand, within ABIE40_RS23190 at 787.617 kb on + strand, within ABIE40_RS23190 at 787.617 kb on + strand, within ABIE40_RS23190 at 787.617 kb on + strand, within ABIE40_RS23190 at 787.617 kb on + strand, within ABIE40_RS23190 at 787.618 kb on - strand, within ABIE40_RS23190 at 787.618 kb on - strand, within ABIE40_RS23190 at 787.618 kb on - strand, within ABIE40_RS23190 at 787.618 kb on - strand, within ABIE40_RS23190 at 787.618 kb on - strand, within ABIE40_RS23190 at 787.618 kb on - strand, within ABIE40_RS23190 at 787.618 kb on - strand, within ABIE40_RS23190 at 787.618 kb on - strand, within ABIE40_RS23190 at 787.618 kb on - strand, within ABIE40_RS23190 at 787.618 kb on - strand, within ABIE40_RS23190 at 787.621 kb on + strand, within ABIE40_RS23190 at 787.621 kb on + strand, within ABIE40_RS23190 at 787.621 kb on + strand, within ABIE40_RS23190 at 787.621 kb on + strand, within ABIE40_RS23190 at 787.621 kb on + strand, within ABIE40_RS23190 at 787.622 kb on - strand, within ABIE40_RS23190 at 787.622 kb on - strand, within ABIE40_RS23190 at 787.622 kb on - strand, within ABIE40_RS23190 at 787.622 kb on - strand, within ABIE40_RS23190 at 787.622 kb on - strand, within ABIE40_RS23190 at 787.622 kb on - strand, within ABIE40_RS23190 at 787.622 kb on - strand, within ABIE40_RS23190 at 787.622 kb on - strand, within ABIE40_RS23190 at 787.622 kb on - strand, within ABIE40_RS23190 at 787.622 kb on - strand, within ABIE40_RS23190 at 787.693 kb on + strand, within ABIE40_RS23190 at 787.693 kb on + strand, within ABIE40_RS23190 at 787.693 kb on + strand, within ABIE40_RS23190 at 787.694 kb on - strand, within ABIE40_RS23190 at 787.694 kb on - strand, within ABIE40_RS23190 at 787.694 kb on - strand, within ABIE40_RS23190 at 787.694 kb on - strand, within ABIE40_RS23190 at 787.719 kb on + strand, within ABIE40_RS23190 at 787.719 kb on + strand, within ABIE40_RS23190 at 787.720 kb on - strand, within ABIE40_RS23190 at 787.845 kb on + strand at 787.857 kb on + strand at 787.858 kb on - strand at 787.901 kb on + strand at 787.902 kb on - strand at 787.902 kb on - strand at 787.952 kb on + strand at 788.047 kb on + strand at 788.346 kb on + strand, within ABIE40_RS23195 at 788.346 kb on + strand, within ABIE40_RS23195 at 788.346 kb on + strand, within ABIE40_RS23195 at 788.346 kb on + strand, within ABIE40_RS23195 at 788.346 kb on + strand, within ABIE40_RS23195 at 788.346 kb on + strand, within ABIE40_RS23195 at 788.346 kb on + strand, within ABIE40_RS23195 at 788.346 kb on + strand, within ABIE40_RS23195 at 788.346 kb on + strand, within ABIE40_RS23195 at 788.346 kb on + strand, within ABIE40_RS23195 at 788.347 kb on - strand, within ABIE40_RS23195 at 788.347 kb on - strand, within ABIE40_RS23195 at 788.347 kb on - strand, within ABIE40_RS23195 at 788.347 kb on - strand, within ABIE40_RS23195 at 788.347 kb on - strand, within ABIE40_RS23195 at 788.347 kb on - strand, within ABIE40_RS23195 at 788.347 kb on - strand, within ABIE40_RS23195 at 788.381 kb on + strand, within ABIE40_RS23195 at 788.655 kb on - strand, within ABIE40_RS23195
Per-strain Table
Position Strand Gene LocusTag Fraction Formate (C) remove 786,417 + ABIE40_RS23185 0.39 +0.6 786,417 + ABIE40_RS23185 0.39 +2.4 786,417 + ABIE40_RS23185 0.39 -0.0 786,417 + ABIE40_RS23185 0.39 -0.3 786,417 + ABIE40_RS23185 0.39 -0.1 786,418 - ABIE40_RS23185 0.39 -0.6 786,418 - ABIE40_RS23185 0.39 +0.6 786,418 - ABIE40_RS23185 0.39 +0.1 786,418 - ABIE40_RS23185 0.39 -3.5 786,418 - ABIE40_RS23185 0.39 +0.6 786,599 + ABIE40_RS23185 0.55 -0.1 786,599 + ABIE40_RS23185 0.55 -0.8 786,600 - ABIE40_RS23185 0.55 -0.3 786,766 - ABIE40_RS23185 0.70 +0.5 786,996 + ABIE40_RS23185 0.90 +0.6 786,996 + ABIE40_RS23185 0.90 -0.9 787,002 + -0.9 787,002 + +0.8 787,002 + +0.8 787,002 + +0.4 787,002 + +0.1 787,002 + +1.1 787,002 + +0.3 787,002 + +0.6 787,002 + -0.3 787,003 - +1.3 787,003 - -3.5 787,003 - +1.2 787,003 - -0.0 787,003 - -0.4 787,033 - +0.9 787,059 + +0.0 787,059 + +0.5 787,059 + -1.2 787,059 + -0.6 787,060 - +0.4 787,060 - -0.4 787,060 - -0.5 787,060 - +0.3 787,060 - -2.7 787,060 - -0.9 787,078 + -1.4 787,078 + +0.4 787,079 - +0.1 787,167 + -0.1 787,168 - +0.1 787,168 - +1.9 787,170 + +0.2 787,170 + +1.1 787,170 + -0.1 787,170 + -0.4 787,170 + +0.2 787,171 - -0.0 787,171 - +1.3 787,171 - +0.9 787,171 - -0.9 787,171 - -0.5 787,617 + ABIE40_RS23190 0.59 -1.5 787,617 + ABIE40_RS23190 0.59 -0.1 787,617 + ABIE40_RS23190 0.59 +1.0 787,617 + ABIE40_RS23190 0.59 +0.4 787,617 + ABIE40_RS23190 0.59 +0.7 787,617 + ABIE40_RS23190 0.59 +0.2 787,618 - ABIE40_RS23190 0.59 -0.2 787,618 - ABIE40_RS23190 0.59 +0.1 787,618 - ABIE40_RS23190 0.59 -1.8 787,618 - ABIE40_RS23190 0.59 +1.6 787,618 - ABIE40_RS23190 0.59 -0.9 787,618 - ABIE40_RS23190 0.59 -1.5 787,618 - ABIE40_RS23190 0.59 -0.4 787,618 - ABIE40_RS23190 0.59 +0.1 787,618 - ABIE40_RS23190 0.59 -1.3 787,618 - ABIE40_RS23190 0.59 +1.1 787,621 + ABIE40_RS23190 0.60 -1.2 787,621 + ABIE40_RS23190 0.60 +0.8 787,621 + ABIE40_RS23190 0.60 -2.4 787,621 + ABIE40_RS23190 0.60 -0.1 787,621 + ABIE40_RS23190 0.60 +1.4 787,622 - ABIE40_RS23190 0.60 -0.3 787,622 - ABIE40_RS23190 0.60 -0.1 787,622 - ABIE40_RS23190 0.60 -0.0 787,622 - ABIE40_RS23190 0.60 -0.6 787,622 - ABIE40_RS23190 0.60 +0.4 787,622 - ABIE40_RS23190 0.60 +0.1 787,622 - ABIE40_RS23190 0.60 +1.3 787,622 - ABIE40_RS23190 0.60 -0.3 787,622 - ABIE40_RS23190 0.60 +0.4 787,622 - ABIE40_RS23190 0.60 -0.1 787,693 + ABIE40_RS23190 0.70 -0.3 787,693 + ABIE40_RS23190 0.70 +0.3 787,693 + ABIE40_RS23190 0.70 -0.4 787,694 - ABIE40_RS23190 0.70 -0.6 787,694 - ABIE40_RS23190 0.70 -0.5 787,694 - ABIE40_RS23190 0.70 -0.3 787,694 - ABIE40_RS23190 0.70 +0.9 787,719 + ABIE40_RS23190 0.74 -0.5 787,719 + ABIE40_RS23190 0.74 -1.3 787,720 - ABIE40_RS23190 0.74 -0.0 787,845 + +2.2 787,857 + -0.6 787,858 - -0.0 787,901 + -1.3 787,902 - +0.6 787,902 - +0.2 787,952 + +0.3 788,047 + +0.3 788,346 + ABIE40_RS23195 0.32 -1.1 788,346 + ABIE40_RS23195 0.32 -1.6 788,346 + ABIE40_RS23195 0.32 +1.7 788,346 + ABIE40_RS23195 0.32 -0.3 788,346 + ABIE40_RS23195 0.32 -0.2 788,346 + ABIE40_RS23195 0.32 -0.7 788,346 + ABIE40_RS23195 0.32 -0.7 788,346 + ABIE40_RS23195 0.32 -0.5 788,346 + ABIE40_RS23195 0.32 +0.7 788,346 + ABIE40_RS23195 0.32 -0.9 788,347 - ABIE40_RS23195 0.33 +0.3 788,347 - ABIE40_RS23195 0.33 -1.4 788,347 - ABIE40_RS23195 0.33 -2.3 788,347 - ABIE40_RS23195 0.33 -0.5 788,347 - ABIE40_RS23195 0.33 -0.1 788,347 - ABIE40_RS23195 0.33 +0.2 788,347 - ABIE40_RS23195 0.33 +0.0 788,381 + ABIE40_RS23195 0.36 -1.1 788,655 - ABIE40_RS23195 0.61 -1.3
Or see this region's nucleotide sequence