Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS20660

Experiment: Formate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS20655 and ABIE40_RS20660 are separated by 181 nucleotidesABIE40_RS20660 and ABIE40_RS20665 are separated by 77 nucleotides ABIE40_RS20655: ABIE40_RS20655 - substrate-binding domain-containing protein, at 238,668 to 239,681 _RS20655 ABIE40_RS20660: ABIE40_RS20660 - ABC transporter substrate-binding protein, at 239,863 to 240,891 _RS20660 ABIE40_RS20665: ABIE40_RS20665 - iron ABC transporter permease, at 240,969 to 243,209 _RS20665 Position (kb) 239 240 241Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 239.012 kb on - strand, within ABIE40_RS20655at 239.457 kb on - strand, within ABIE40_RS20655at 239.533 kb on + strand, within ABIE40_RS20655at 239.600 kb on + strandat 239.601 kb on - strandat 239.606 kb on + strandat 239.607 kb on - strandat 239.607 kb on - strandat 239.788 kb on - strandat 239.788 kb on - strandat 239.861 kb on + strandat 239.874 kb on + strandat 240.055 kb on + strand, within ABIE40_RS20660at 240.055 kb on + strand, within ABIE40_RS20660at 240.055 kb on + strand, within ABIE40_RS20660at 240.055 kb on + strand, within ABIE40_RS20660at 240.055 kb on + strand, within ABIE40_RS20660at 240.055 kb on + strand, within ABIE40_RS20660at 240.056 kb on - strand, within ABIE40_RS20660at 240.056 kb on - strand, within ABIE40_RS20660at 240.056 kb on - strand, within ABIE40_RS20660at 240.056 kb on - strand, within ABIE40_RS20660at 240.056 kb on - strand, within ABIE40_RS20660at 240.096 kb on + strand, within ABIE40_RS20660at 240.097 kb on - strand, within ABIE40_RS20660at 240.160 kb on + strand, within ABIE40_RS20660at 240.223 kb on + strand, within ABIE40_RS20660at 240.223 kb on + strand, within ABIE40_RS20660at 240.224 kb on - strand, within ABIE40_RS20660at 240.224 kb on - strand, within ABIE40_RS20660at 240.224 kb on - strand, within ABIE40_RS20660at 240.224 kb on - strand, within ABIE40_RS20660at 240.224 kb on - strand, within ABIE40_RS20660at 240.242 kb on - strand, within ABIE40_RS20660at 240.265 kb on + strand, within ABIE40_RS20660at 240.265 kb on + strand, within ABIE40_RS20660at 240.291 kb on + strand, within ABIE40_RS20660at 240.337 kb on + strand, within ABIE40_RS20660at 240.338 kb on - strand, within ABIE40_RS20660at 240.338 kb on - strand, within ABIE40_RS20660at 240.338 kb on - strand, within ABIE40_RS20660at 240.338 kb on - strand, within ABIE40_RS20660at 240.385 kb on + strand, within ABIE40_RS20660at 240.385 kb on + strand, within ABIE40_RS20660at 240.386 kb on - strand, within ABIE40_RS20660at 240.386 kb on - strand, within ABIE40_RS20660at 240.386 kb on - strand, within ABIE40_RS20660at 240.386 kb on - strand, within ABIE40_RS20660at 240.440 kb on - strand, within ABIE40_RS20660at 240.472 kb on + strand, within ABIE40_RS20660at 240.473 kb on - strand, within ABIE40_RS20660at 240.473 kb on - strand, within ABIE40_RS20660at 240.474 kb on + strand, within ABIE40_RS20660at 240.474 kb on + strand, within ABIE40_RS20660at 240.475 kb on - strand, within ABIE40_RS20660at 240.475 kb on - strand, within ABIE40_RS20660at 240.475 kb on - strand, within ABIE40_RS20660at 240.475 kb on - strand, within ABIE40_RS20660at 240.475 kb on - strand, within ABIE40_RS20660at 240.475 kb on - strand, within ABIE40_RS20660at 240.497 kb on + strand, within ABIE40_RS20660at 240.805 kb on + strandat 240.805 kb on + strandat 240.820 kb on + strandat 240.820 kb on + strandat 240.821 kb on - strandat 240.941 kb on + strandat 240.941 kb on + strandat 240.942 kb on - strandat 240.942 kb on - strandat 240.942 kb on - strandat 240.942 kb on - strandat 240.942 kb on - strandat 240.942 kb on - strandat 240.942 kb on - strandat 240.943 kb on + strandat 240.944 kb on - strandat 241.027 kb on + strandat 241.027 kb on + strandat 241.027 kb on + strandat 241.027 kb on + strandat 241.027 kb on + strandat 241.028 kb on - strandat 241.028 kb on - strandat 241.028 kb on - strandat 241.042 kb on - strandat 241.134 kb on + strandat 241.134 kb on + strandat 241.134 kb on + strandat 241.134 kb on + strandat 241.134 kb on + strandat 241.134 kb on + strandat 241.134 kb on + strandat 241.135 kb on - strandat 241.135 kb on - strandat 241.135 kb on - strandat 241.135 kb on - strandat 241.497 kb on + strand, within ABIE40_RS20665at 241.498 kb on - strand, within ABIE40_RS20665at 241.574 kb on + strand, within ABIE40_RS20665at 241.574 kb on + strand, within ABIE40_RS20665at 241.575 kb on - strand, within ABIE40_RS20665at 241.731 kb on + strand, within ABIE40_RS20665at 241.732 kb on - strand, within ABIE40_RS20665at 241.881 kb on + strand, within ABIE40_RS20665

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate (C)
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239,012 - ABIE40_RS20655 0.34 +0.1
239,457 - ABIE40_RS20655 0.78 -1.0
239,533 + ABIE40_RS20655 0.85 -2.1
239,600 + -0.5
239,601 - +0.0
239,606 + +0.3
239,607 - -0.7
239,607 - +1.5
239,788 - -0.6
239,788 - +0.4
239,861 + -0.7
239,874 + -1.8
240,055 + ABIE40_RS20660 0.19 +0.1
240,055 + ABIE40_RS20660 0.19 -1.1
240,055 + ABIE40_RS20660 0.19 -0.1
240,055 + ABIE40_RS20660 0.19 +1.0
240,055 + ABIE40_RS20660 0.19 -0.8
240,055 + ABIE40_RS20660 0.19 +1.1
240,056 - ABIE40_RS20660 0.19 -0.8
240,056 - ABIE40_RS20660 0.19 +0.0
240,056 - ABIE40_RS20660 0.19 -0.3
240,056 - ABIE40_RS20660 0.19 -0.3
240,056 - ABIE40_RS20660 0.19 -0.2
240,096 + ABIE40_RS20660 0.23 -1.5
240,097 - ABIE40_RS20660 0.23 -0.3
240,160 + ABIE40_RS20660 0.29 +0.3
240,223 + ABIE40_RS20660 0.35 -0.5
240,223 + ABIE40_RS20660 0.35 +0.1
240,224 - ABIE40_RS20660 0.35 -0.5
240,224 - ABIE40_RS20660 0.35 -2.1
240,224 - ABIE40_RS20660 0.35 +0.0
240,224 - ABIE40_RS20660 0.35 +1.3
240,224 - ABIE40_RS20660 0.35 -0.4
240,242 - ABIE40_RS20660 0.37 -1.0
240,265 + ABIE40_RS20660 0.39 -0.3
240,265 + ABIE40_RS20660 0.39 +0.9
240,291 + ABIE40_RS20660 0.42 -0.8
240,337 + ABIE40_RS20660 0.46 +2.4
240,338 - ABIE40_RS20660 0.46 -1.0
240,338 - ABIE40_RS20660 0.46 +0.1
240,338 - ABIE40_RS20660 0.46 -0.9
240,338 - ABIE40_RS20660 0.46 -0.7
240,385 + ABIE40_RS20660 0.51 +0.0
240,385 + ABIE40_RS20660 0.51 -0.2
240,386 - ABIE40_RS20660 0.51 +0.9
240,386 - ABIE40_RS20660 0.51 +0.8
240,386 - ABIE40_RS20660 0.51 -0.8
240,386 - ABIE40_RS20660 0.51 +0.0
240,440 - ABIE40_RS20660 0.56 +0.2
240,472 + ABIE40_RS20660 0.59 -0.7
240,473 - ABIE40_RS20660 0.59 +0.6
240,473 - ABIE40_RS20660 0.59 +0.8
240,474 + ABIE40_RS20660 0.59 +0.3
240,474 + ABIE40_RS20660 0.59 +0.6
240,475 - ABIE40_RS20660 0.59 +0.0
240,475 - ABIE40_RS20660 0.59 -1.3
240,475 - ABIE40_RS20660 0.59 -1.4
240,475 - ABIE40_RS20660 0.59 -0.1
240,475 - ABIE40_RS20660 0.59 -0.6
240,475 - ABIE40_RS20660 0.59 -0.7
240,497 + ABIE40_RS20660 0.62 -0.5
240,805 + +0.2
240,805 + +1.8
240,820 + -0.1
240,820 + +0.1
240,821 - -1.3
240,941 + -1.3
240,941 + +0.4
240,942 - +0.4
240,942 - +0.0
240,942 - -2.9
240,942 - +0.2
240,942 - -1.0
240,942 - -0.2
240,942 - -0.4
240,943 + -1.9
240,944 - -0.5
241,027 + -1.8
241,027 + -0.5
241,027 + +0.3
241,027 + +0.4
241,027 + +1.4
241,028 - -2.7
241,028 - -2.8
241,028 - -0.7
241,042 - +0.3
241,134 + -0.2
241,134 + +0.2
241,134 + -0.7
241,134 + -0.5
241,134 + +0.7
241,134 + -0.4
241,134 + -0.6
241,135 - -0.2
241,135 - -0.6
241,135 - +0.2
241,135 - -0.7
241,497 + ABIE40_RS20665 0.24 +0.2
241,498 - ABIE40_RS20665 0.24 +0.8
241,574 + ABIE40_RS20665 0.27 -1.0
241,574 + ABIE40_RS20665 0.27 +0.4
241,575 - ABIE40_RS20665 0.27 -0.1
241,731 + ABIE40_RS20665 0.34 -0.5
241,732 - ABIE40_RS20665 0.34 -0.2
241,881 + ABIE40_RS20665 0.41 -0.1

Or see this region's nucleotide sequence