Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS19345

Experiment: Formate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS19335 and ABIE40_RS19340 are separated by 3 nucleotidesABIE40_RS19340 and ABIE40_RS19345 are separated by 39 nucleotidesABIE40_RS19345 and ABIE40_RS19350 are separated by 32 nucleotides ABIE40_RS19335: ABIE40_RS19335 - tryptophan synthase subunit beta, at 3,880,810 to 3,882,030 _RS19335 ABIE40_RS19340: ABIE40_RS19340 - tryptophan synthase subunit alpha, at 3,882,034 to 3,882,873 _RS19340 ABIE40_RS19345: ABIE40_RS19345 - acetyl-CoA carboxylase, carboxyltransferase subunit beta, at 3,882,913 to 3,883,815 _RS19345 ABIE40_RS19350: ABIE40_RS19350 - folylpolyglutamate synthase/dihydrofolate synthase family protein, at 3,883,848 to 3,885,200 _RS19350 Position (kb) 3882 3883 3884Strain fitness (log2 ratio) -2 -1 0 1at 3882.343 kb on + strand, within ABIE40_RS19340at 3882.343 kb on + strand, within ABIE40_RS19340at 3882.891 kb on + strandat 3883.852 kb on + strandat 3883.852 kb on + strandat 3883.856 kb on + strandat 3883.856 kb on + strandat 3883.856 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate (C)
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3,882,343 + ABIE40_RS19340 0.37 -0.8
3,882,343 + ABIE40_RS19340 0.37 -2.0
3,882,891 + -0.2
3,883,852 + +0.4
3,883,852 + +1.3
3,883,856 + -0.0
3,883,856 + +1.0
3,883,856 + -1.3

Or see this region's nucleotide sequence