Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS19065

Experiment: Formate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formate (C)
3,817,807	-		ABIE40_RS19055	0.89	-0.3
3,817,807	-		ABIE40_RS19055	0.89	+0.6
3,817,807	-		ABIE40_RS19055	0.89	-0.4
3,817,886	-				+0.2
3,817,898	-				-0.0
3,817,922	+				-0.1
3,817,922	+				+0.1
3,817,923	-				+2.1
3,817,923	-				-0.3
3,817,979	+				+0.7
3,817,979	+				-1.3
3,817,980	-				-0.5
3,818,216	+		ABIE40_RS19060	0.34	+1.2
3,818,230	-		ABIE40_RS19060	0.36	+1.7
3,818,288	-		ABIE40_RS19060	0.44	+0.0
3,818,288	-		ABIE40_RS19060	0.44	-0.0
3,818,377	+		ABIE40_RS19060	0.56	+0.6
3,818,378	-		ABIE40_RS19060	0.56	-0.3
3,818,378	-		ABIE40_RS19060	0.56	-0.5
3,818,378	-		ABIE40_RS19060	0.56	-0.6
3,818,561	-		ABIE40_RS19060	0.81	+0.8
3,818,696	-				+0.1
3,818,754	-				-1.3
3,818,794	+				-0.5
3,818,794	+				-1.3
3,818,795	-				-1.8
3,818,795	-				-0.1
3,818,795	-				+0.2
3,818,795	-				-1.3
3,818,795	-				-0.5
3,818,852	+				-0.9
3,818,852	+				+0.3
3,818,852	+				-0.8
3,818,852	+				+0.1
3,818,852	+				+1.6
3,818,852	+				+0.0
3,818,852	+				-0.7
3,818,853	-				-1.6
3,818,853	-				-0.4
3,818,853	-				-0.6
3,818,853	-				+0.4
3,818,853	-				+0.4
3,818,853	-				+0.5
3,818,857	-				-0.2
3,818,857	-				+0.7
3,818,926	-				+0.0
3,818,931	-				-0.3
3,818,931	-				-0.4
3,818,949	+		ABIE40_RS19065	0.10	+1.5
3,818,950	-		ABIE40_RS19065	0.11	-1.8
3,818,951	+		ABIE40_RS19065	0.11	+1.5
3,819,002	+		ABIE40_RS19065	0.13	+1.2
3,819,002	+		ABIE40_RS19065	0.13	-1.7
3,819,002	+		ABIE40_RS19065	0.13	+0.1
3,819,002	+		ABIE40_RS19065	0.13	+0.1
3,819,003	-		ABIE40_RS19065	0.13	-0.3
3,819,017	+		ABIE40_RS19065	0.14	-1.7
3,819,017	+		ABIE40_RS19065	0.14	+0.6
3,819,018	-		ABIE40_RS19065	0.14	+0.6
3,819,018	-		ABIE40_RS19065	0.14	-0.2
3,819,018	-		ABIE40_RS19065	0.14	-0.5
3,819,112	-		ABIE40_RS19065	0.19	+0.6
3,819,112	-		ABIE40_RS19065	0.19	-0.4
3,819,112	-		ABIE40_RS19065	0.19	+0.1
3,819,113	+		ABIE40_RS19065	0.19	+3.7
3,819,113	+		ABIE40_RS19065	0.19	+0.1
3,819,113	+		ABIE40_RS19065	0.19	-0.7
3,819,114	-		ABIE40_RS19065	0.19	+1.7
3,819,114	-		ABIE40_RS19065	0.19	+1.7
3,819,114	-		ABIE40_RS19065	0.19	-1.7
3,819,306	-		ABIE40_RS19065	0.29	-0.2
3,819,399	-		ABIE40_RS19065	0.34	-0.2
3,819,461	+		ABIE40_RS19065	0.38	+0.0
3,819,461	+		ABIE40_RS19065	0.38	-0.1
3,819,461	+		ABIE40_RS19065	0.38	+0.3
3,819,461	+		ABIE40_RS19065	0.38	+0.5
3,819,461	+		ABIE40_RS19065	0.38	-0.1
3,819,461	+		ABIE40_RS19065	0.38	-0.4
3,819,462	-		ABIE40_RS19065	0.38	-1.2
3,819,462	-		ABIE40_RS19065	0.38	+0.0
3,819,526	-		ABIE40_RS19065	0.41	-0.5
3,819,526	-		ABIE40_RS19065	0.41	-0.3
3,819,602	+		ABIE40_RS19065	0.45	+0.9
3,819,602	+		ABIE40_RS19065	0.45	-0.9
3,819,602	+		ABIE40_RS19065	0.45	+0.4
3,819,622	-		ABIE40_RS19065	0.46	-1.0
3,819,622	-		ABIE40_RS19065	0.46	+0.2
3,819,623	+		ABIE40_RS19065	0.46	+0.1
3,819,623	+		ABIE40_RS19065	0.46	+0.2
3,819,623	+		ABIE40_RS19065	0.46	-1.3
3,819,623	+		ABIE40_RS19065	0.46	-1.6
3,819,623	+		ABIE40_RS19065	0.46	+0.5
3,819,623	+		ABIE40_RS19065	0.46	+0.2
3,819,623	+		ABIE40_RS19065	0.46	-0.0
3,819,624	-		ABIE40_RS19065	0.46	-0.2
3,819,624	-		ABIE40_RS19065	0.46	-0.8
3,819,624	-		ABIE40_RS19065	0.46	-0.6
3,819,624	-		ABIE40_RS19065	0.46	-0.1
3,819,624	-		ABIE40_RS19065	0.46	-0.8
3,819,624	-		ABIE40_RS19065	0.46	+0.2
3,819,624	-		ABIE40_RS19065	0.46	-1.7
3,819,624	-		ABIE40_RS19065	0.46	+0.2
3,819,624	-		ABIE40_RS19065	0.46	-0.0
3,819,637	-		ABIE40_RS19065	0.47	+0.1
3,819,650	+		ABIE40_RS19065	0.48	+1.2
3,819,650	+		ABIE40_RS19065	0.48	+1.3
3,819,651	-		ABIE40_RS19065	0.48	+1.2
3,819,651	-		ABIE40_RS19065	0.48	+0.0
3,819,651	-		ABIE40_RS19065	0.48	-1.7
3,819,651	-		ABIE40_RS19065	0.48	+0.3
3,819,705	+		ABIE40_RS19065	0.51	-0.7
3,819,750	+		ABIE40_RS19065	0.53	+0.2
3,819,750	+		ABIE40_RS19065	0.53	-0.0
3,819,750	+		ABIE40_RS19065	0.53	+1.3
3,819,751	-		ABIE40_RS19065	0.53	-1.7
3,819,771	+		ABIE40_RS19065	0.54	-0.2
3,819,771	+		ABIE40_RS19065	0.54	-1.4
3,819,771	+		ABIE40_RS19065	0.54	-1.4
3,819,771	+		ABIE40_RS19065	0.54	-0.7
3,819,772	-		ABIE40_RS19065	0.54	+0.7
3,819,772	-		ABIE40_RS19065	0.54	+0.9
3,819,772	-		ABIE40_RS19065	0.54	+2.7
3,819,772	-		ABIE40_RS19065	0.54	-2.7
3,819,772	-		ABIE40_RS19065	0.54	+0.9
3,819,913	+		ABIE40_RS19065	0.62	+0.1
3,820,120	+		ABIE40_RS19065	0.73	+0.2
3,820,120	+		ABIE40_RS19065	0.73	-0.2
3,820,120	+		ABIE40_RS19065	0.73	-0.4
3,820,120	-		ABIE40_RS19065	0.73	-2.1
3,820,121	-		ABIE40_RS19065	0.73	-0.8
3,820,160	+		ABIE40_RS19065	0.75	+0.5
3,820,196	+		ABIE40_RS19065	0.77	+0.8
3,820,196	+		ABIE40_RS19065	0.77	-1.3
3,820,196	+		ABIE40_RS19065	0.77	-0.1
3,820,196	+		ABIE40_RS19065	0.77	-1.9
3,820,196	+		ABIE40_RS19065	0.77	-0.2
3,820,196	+		ABIE40_RS19065	0.77	+0.4
3,820,196	+		ABIE40_RS19065	0.77	+0.2
3,820,196	+		ABIE40_RS19065	0.77	-1.1
3,820,196	+		ABIE40_RS19065	0.77	+0.9
3,820,196	+		ABIE40_RS19065	0.77	-0.0
3,820,196	+		ABIE40_RS19065	0.77	+0.1
3,820,196	+		ABIE40_RS19065	0.77	-0.1
3,820,196	+		ABIE40_RS19065	0.77	-0.6
3,820,196	+		ABIE40_RS19065	0.77	+0.0
3,820,197	-		ABIE40_RS19065	0.77	+0.2
3,820,197	-		ABIE40_RS19065	0.77	-1.3
3,820,197	-		ABIE40_RS19065	0.77	+0.2
3,820,197	-		ABIE40_RS19065	0.77	+0.4
3,820,197	-		ABIE40_RS19065	0.77	+0.2
3,820,197	-		ABIE40_RS19065	0.77	+1.0
3,820,197	-		ABIE40_RS19065	0.77	-0.8
3,820,197	-		ABIE40_RS19065	0.77	+1.2
3,820,197	-		ABIE40_RS19065	0.77	-1.0
3,820,197	-		ABIE40_RS19065	0.77	-0.2
3,820,197	-		ABIE40_RS19065	0.77	-0.8
3,820,197	-		ABIE40_RS19065	0.77	-0.5
3,820,197	-		ABIE40_RS19065	0.77	-0.4
3,820,214	+		ABIE40_RS19065	0.78	+2.1
3,820,358	+		ABIE40_RS19065	0.85	-0.3
3,820,358	+		ABIE40_RS19065	0.85	-1.1
3,820,359	-		ABIE40_RS19065	0.85	+0.1
3,820,359	-		ABIE40_RS19065	0.85	-0.2
3,820,484	+				-0.7
3,820,484	+				-0.1
3,820,485	-				+1.7
3,820,485	-				+0.6
3,820,485	-				-0.2
3,820,485	-				+0.3
3,820,499	+				+0.1
3,820,499	+				+0.2
3,820,499	+				+0.5
3,820,499	+				-0.3
3,820,499	+				+1.4
3,820,499	+				-0.9
3,820,499	+				+1.7
3,820,499	+				+0.7
3,820,499	+				-0.1
3,820,499	+				+0.1
3,820,499	+				-0.6
3,820,499	+				+0.9
3,820,500	-				-0.2
3,820,500	-				+0.2
3,820,500	-				-2.3
3,820,500	-				-0.2
3,820,500	-				+0.4
3,820,500	-				+0.0
3,820,517	+				+1.5
3,820,517	+				-0.7
3,820,517	+				-0.5
3,820,524	-				+0.1
3,820,533	-				-1.0
3,820,693	-				-0.1
3,820,693	-				+0.2
3,820,693	-				-1.0
3,820,693	-				+1.0
3,820,693	-				+1.0
3,820,766	+				+1.4
3,820,766	+				-3.4
3,820,779	+				-0.1
3,820,852	-				+0.3
3,820,916	+				-1.1
3,820,916	+				-0.5
3,820,916	+				-2.3
3,820,917	-				+0.6
3,820,917	-				-1.5
3,820,917	-				+0.5
3,820,917	-				-1.0
3,820,917	-				-0.6
3,821,131	+		ABIE40_RS19070	0.25	-2.5
3,821,131	+		ABIE40_RS19070	0.25	+1.0
3,821,203	+		ABIE40_RS19070	0.31	-0.3
3,821,203	+		ABIE40_RS19070	0.31	+1.4
3,821,204	-		ABIE40_RS19070	0.31	+3.7
3,821,204	-		ABIE40_RS19070	0.31	+1.2
3,821,204	-		ABIE40_RS19070	0.31	+0.0
3,821,229	+		ABIE40_RS19070	0.33	-0.4
3,821,230	-		ABIE40_RS19070	0.33	-0.2
3,821,230	-		ABIE40_RS19070	0.33	+0.5
3,821,283	+		ABIE40_RS19070	0.37	-0.6
3,821,301	+		ABIE40_RS19070	0.38	-0.8
3,821,488	+		ABIE40_RS19070	0.53	+2.2
3,821,488	+		ABIE40_RS19070	0.53	-0.5
3,821,489	-		ABIE40_RS19070	0.53	+1.1
3,821,489	-		ABIE40_RS19070	0.53	-0.7
3,821,507	-		ABIE40_RS19070	0.55	-0.5
3,821,569	-		ABIE40_RS19070	0.60	-0.4
3,821,588	-		ABIE40_RS19070	0.61	+0.5