Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS17715

Experiment: Formate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formate (C)
3,535,233	+		ABIE40_RS17710	0.26	-1.3
3,535,234	-		ABIE40_RS17710	0.26	-1.3
3,535,452	+		ABIE40_RS17710	0.45	+0.9
3,535,453	-		ABIE40_RS17710	0.45	-0.9
3,535,491	-		ABIE40_RS17710	0.49	-0.4
3,535,499	+		ABIE40_RS17710	0.49	-1.0
3,535,499	+		ABIE40_RS17710	0.49	+0.6
3,535,500	-		ABIE40_RS17710	0.49	-2.0
3,535,559	+		ABIE40_RS17710	0.55	+0.4
3,535,559	+		ABIE40_RS17710	0.55	-1.0
3,535,560	-		ABIE40_RS17710	0.55	+2.0
3,535,695	+		ABIE40_RS17710	0.67	+0.4
3,535,695	+		ABIE40_RS17710	0.67	-2.5
3,535,702	-		ABIE40_RS17710	0.67	+0.6
3,535,763	+		ABIE40_RS17710	0.73	-1.2
3,535,763	+		ABIE40_RS17710	0.73	-0.4
3,535,763	+		ABIE40_RS17710	0.73	-2.0
3,535,763	+		ABIE40_RS17710	0.73	+0.4
3,535,763	+		ABIE40_RS17710	0.73	-2.7
3,535,764	-		ABIE40_RS17710	0.73	-2.4
3,535,764	-		ABIE40_RS17710	0.73	+0.8
3,535,764	-		ABIE40_RS17710	0.73	-1.3
3,535,764	-		ABIE40_RS17710	0.73	+0.2
3,535,764	-		ABIE40_RS17710	0.73	+0.3
3,535,766	+		ABIE40_RS17710	0.73	-0.7
3,535,766	+		ABIE40_RS17710	0.73	+0.5
3,535,766	+		ABIE40_RS17710	0.73	-0.1
3,535,766	+		ABIE40_RS17710	0.73	+0.9
3,535,766	+		ABIE40_RS17710	0.73	-1.8
3,535,766	+		ABIE40_RS17710	0.73	-0.1
3,535,766	+		ABIE40_RS17710	0.73	-0.3
3,535,767	-		ABIE40_RS17710	0.73	-1.2
3,535,767	-		ABIE40_RS17710	0.73	-0.2
3,535,767	-		ABIE40_RS17710	0.73	-1.1
3,535,767	-		ABIE40_RS17710	0.73	-1.7
3,535,860	+		ABIE40_RS17710	0.81	+0.7
3,535,860	+		ABIE40_RS17710	0.81	-1.0
3,535,861	-		ABIE40_RS17710	0.82	+0.3
3,535,861	-		ABIE40_RS17710	0.82	+0.4
3,535,861	-		ABIE40_RS17710	0.82	-1.8
3,535,861	-		ABIE40_RS17710	0.82	+0.0
3,535,862	+		ABIE40_RS17710	0.82	+0.4
3,535,862	+		ABIE40_RS17710	0.82	+1.5
3,535,862	+		ABIE40_RS17710	0.82	+0.2
3,535,862	+		ABIE40_RS17710	0.82	+0.4
3,535,863	-		ABIE40_RS17710	0.82	+0.7
3,535,896	-		ABIE40_RS17710	0.85	-0.2
3,535,956	+				-0.3
3,536,071	+				+0.6
3,536,071	+				-1.3
3,536,071	+				+0.6
3,536,072	-				-0.1
3,536,072	-				+0.9
3,536,072	-				-0.1
3,536,078	+				-0.2
3,536,079	-				-2.1
3,536,110	-				-0.1
3,536,113	+				+1.1
3,536,114	-				-2.1
3,536,118	+				-1.3
3,536,118	+				-0.0
3,536,118	+				-0.5
3,536,118	+				-0.5
3,536,118	+				+0.2
3,536,118	+				-1.2
3,536,119	-				+0.9
3,536,119	-				-0.9
3,536,120	+				+0.5
3,536,120	+				+0.7
3,536,203	+				-0.6
3,536,203	+				+0.9
3,536,203	+				+0.0
3,536,205	+				-0.1
3,536,205	+				+0.6
3,536,243	-				+0.6
3,536,567	-		ABIE40_RS17715	0.30	-0.2
3,536,695	+		ABIE40_RS17715	0.41	-0.2
3,536,695	+		ABIE40_RS17715	0.41	-0.1
3,536,696	-		ABIE40_RS17715	0.41	-0.0
3,536,696	-		ABIE40_RS17715	0.41	+0.4
3,536,696	-		ABIE40_RS17715	0.41	+0.8
3,536,952	+		ABIE40_RS17715	0.63	+0.5
3,536,973	-		ABIE40_RS17715	0.65	-0.4
3,537,103	+		ABIE40_RS17715	0.76	-0.8
3,537,103	+		ABIE40_RS17715	0.76	+0.7
3,537,103	+		ABIE40_RS17715	0.76	+2.2
3,537,209	-		ABIE40_RS17715	0.85	+0.9
3,537,226	+		ABIE40_RS17715	0.87	+0.6
3,537,226	+		ABIE40_RS17715	0.87	+0.7
3,537,226	+		ABIE40_RS17715	0.87	+0.2
3,537,226	+		ABIE40_RS17715	0.87	+0.2
3,537,227	-		ABIE40_RS17715	0.87	-1.5
3,537,227	-		ABIE40_RS17715	0.87	-0.5
3,537,227	-		ABIE40_RS17715	0.87	+0.3
3,537,301	+				-0.6
3,537,337	+				-0.6
3,537,340	+				-0.1
3,537,341	-				+0.3
3,537,433	+				-0.1
3,537,433	+				+2.0
3,537,433	+				+2.2
3,537,433	+				+0.3
3,537,459	-		ABIE40_RS17720	0.10	+0.5
3,537,471	+		ABIE40_RS17720	0.26	+0.8
3,537,471	+		ABIE40_RS17720	0.26	-0.4
3,537,488	-		ABIE40_RS17720	0.48	-0.5
3,537,539	+				+0.0
3,537,550	-				+0.2
3,537,550	-				-1.1
3,537,550	-				-0.5
3,537,606	+				+0.9
3,537,607	-				-1.7
3,537,607	-				-0.5
3,537,607	-				-1.3
3,537,638	+				-0.3
3,537,639	-				-0.2
3,537,639	-				-0.7
3,537,639	-				+1.7
3,537,639	-				-0.5
3,537,639	-				-0.8
3,537,639	-				+0.8
3,537,706	+				-0.1
3,537,707	-				-0.4
3,537,707	-				+1.5
3,537,707	-				+0.3
3,537,707	-				+0.0
3,537,849	+		ABIE40_RS17725	0.32	-0.1
3,537,849	+		ABIE40_RS17725	0.32	-0.3
3,537,849	+		ABIE40_RS17725	0.32	-0.3
3,537,849	+		ABIE40_RS17725	0.32	-0.7
3,537,849	+		ABIE40_RS17725	0.32	+0.3
3,537,849	+		ABIE40_RS17725	0.32	+0.2
3,537,849	+		ABIE40_RS17725	0.32	-0.7
3,537,849	+		ABIE40_RS17725	0.32	+0.6
3,537,849	+		ABIE40_RS17725	0.32	+0.5
3,537,849	+		ABIE40_RS17725	0.32	-1.4
3,537,850	-		ABIE40_RS17725	0.32	+1.7
3,537,850	-		ABIE40_RS17725	0.32	+1.1
3,537,850	-		ABIE40_RS17725	0.32	-0.0
3,537,925	+		ABIE40_RS17725	0.46	+0.1
3,537,926	-		ABIE40_RS17725	0.47	+0.1
3,537,964	+		ABIE40_RS17725	0.54	-1.4
3,537,966	+		ABIE40_RS17725	0.54	-0.0
3,537,966	+		ABIE40_RS17725	0.54	+0.5
3,537,966	+		ABIE40_RS17725	0.54	+0.5
3,537,967	-		ABIE40_RS17725	0.54	+0.3
3,537,967	-		ABIE40_RS17725	0.54	+1.0
3,537,967	-		ABIE40_RS17725	0.54	-1.7
3,538,039	-		ABIE40_RS17725	0.68	+0.3
3,538,039	-		ABIE40_RS17725	0.68	+0.5
3,538,096	+		ABIE40_RS17725	0.79	-1.0
3,538,110	+		ABIE40_RS17725	0.82	+0.3
3,538,110	+		ABIE40_RS17725	0.82	+0.0
3,538,111	-		ABIE40_RS17725	0.82	+0.2
3,538,111	-		ABIE40_RS17725	0.82	-0.4
3,538,111	-		ABIE40_RS17725	0.82	-1.6
3,538,124	-		ABIE40_RS17725	0.85	-0.4
3,538,178	+				+0.3
3,538,179	-				+1.1
3,538,179	-				+0.9
3,538,179	-				+0.2
3,538,179	-				-2.0
3,538,179	-				+1.0
3,538,275	+				-1.2
3,538,275	+				+1.0
3,538,275	+				+0.4
3,538,275	+				-0.6
3,538,276	-				-0.1
3,538,276	-				+0.0
3,538,276	-				+0.7
3,538,280	+				+0.3
3,538,280	+				-0.0
3,538,281	-				-1.7
3,538,320	+				-0.1
3,538,321	-				-0.2
3,538,321	-				+0.4
3,538,321	-				+0.2
3,538,321	-				+0.4
3,538,321	-				-0.8
3,538,343	-				-1.7
3,538,343	-				-0.3