Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS09805

Experiment: Formate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formate (C)
1,890,038	+		ABIE40_RS09795	0.56	+0.1
1,890,038	+		ABIE40_RS09795	0.56	-1.7
1,890,039	-		ABIE40_RS09795	0.56	-1.3
1,890,039	-		ABIE40_RS09795	0.56	-0.7
1,890,039	-		ABIE40_RS09795	0.56	-0.5
1,890,048	+		ABIE40_RS09795	0.57	+1.3
1,890,068	+		ABIE40_RS09795	0.59	+0.2
1,890,068	+		ABIE40_RS09795	0.59	-0.3
1,890,068	+		ABIE40_RS09795	0.59	-1.5
1,890,068	+		ABIE40_RS09795	0.59	-2.2
1,890,068	+		ABIE40_RS09795	0.59	+1.3
1,890,068	+		ABIE40_RS09795	0.59	-1.2
1,890,069	-		ABIE40_RS09795	0.59	+0.1
1,890,069	-		ABIE40_RS09795	0.59	-0.1
1,890,069	-		ABIE40_RS09795	0.59	+0.2
1,890,069	-		ABIE40_RS09795	0.59	-1.5
1,890,070	+		ABIE40_RS09795	0.59	-1.7
1,890,070	+		ABIE40_RS09795	0.59	+0.0
1,890,070	+		ABIE40_RS09795	0.59	-0.9
1,890,070	+		ABIE40_RS09795	0.59	+1.5
1,890,071	-		ABIE40_RS09795	0.59	+1.8
1,890,071	-		ABIE40_RS09795	0.59	-1.5
1,890,071	-		ABIE40_RS09795	0.59	-1.1
1,890,071	-		ABIE40_RS09795	0.59	-0.7
1,890,071	-		ABIE40_RS09795	0.59	+1.1
1,890,071	-		ABIE40_RS09795	0.59	-0.6
1,890,186	+		ABIE40_RS09795	0.71	+1.7
1,890,188	+		ABIE40_RS09795	0.71	-1.4
1,890,188	+		ABIE40_RS09795	0.71	-0.5
1,890,188	+		ABIE40_RS09795	0.71	+0.2
1,890,188	+		ABIE40_RS09795	0.71	-1.0
1,890,189	-		ABIE40_RS09795	0.71	+0.5
1,890,189	-		ABIE40_RS09795	0.71	+1.9
1,890,189	-		ABIE40_RS09795	0.71	-0.7
1,890,189	-		ABIE40_RS09795	0.71	-0.9
1,890,224	+		ABIE40_RS09795	0.75	-0.6
1,890,225	-		ABIE40_RS09795	0.75	-0.7
1,890,225	-		ABIE40_RS09795	0.75	-1.2
1,890,231	+		ABIE40_RS09795	0.75	+0.1
1,890,335	+		ABIE40_RS09795	0.86	-0.5
1,890,336	-		ABIE40_RS09795	0.86	-0.1
1,890,533	+		ABIE40_RS09800	0.13	-2.1
1,890,534	-		ABIE40_RS09800	0.13	-1.7
1,890,534	-		ABIE40_RS09800	0.13	-1.4
1,890,564	-		ABIE40_RS09800	0.21	-0.8
1,890,655	+		ABIE40_RS09800	0.44	-0.5
1,890,663	+		ABIE40_RS09800	0.46	-1.9
1,890,698	+		ABIE40_RS09800	0.55	+0.1
1,890,800	-		ABIE40_RS09800	0.81	-2.1
1,890,800	-		ABIE40_RS09800	0.81	-0.7
1,890,800	-		ABIE40_RS09800	0.81	-3.4
1,890,800	-		ABIE40_RS09800	0.81	-0.1
1,890,800	-		ABIE40_RS09800	0.81	-2.5
1,890,850	-				+0.0
1,890,850	-				-2.1
1,890,854	+				-2.2
1,890,854	+				-0.9
1,890,854	+				-1.7
1,890,854	+				-1.7
1,890,854	+				-0.3
1,890,855	-				-0.3
1,890,855	-				-1.0
1,890,855	-				-2.1
1,890,856	+				-0.5
1,890,856	+				-1.9
1,890,857	-				-0.5
1,890,857	-				-1.5
1,890,859	+				-1.6
1,890,859	+				+0.3
1,890,859	+				-0.5
1,890,859	+				-2.2
1,890,859	+				-3.1
1,890,859	+				-1.5
1,890,859	+				-1.7
1,890,859	+				-1.7
1,890,859	+				-1.0
1,890,860	-				-1.5
1,890,860	-				-2.6
1,890,860	-				-2.6
1,890,860	-				-2.1
1,890,860	-				-1.9
1,890,860	-				-0.7
1,890,860	-				-2.1
1,890,913	+				+0.4
1,890,917	+				-0.8
1,890,917	+				+3.9
1,890,918	-				+0.3
1,890,947	+				-0.6
1,890,996	+				-0.6
1,890,996	+				+0.3
1,891,006	+				+1.7
1,891,007	-				+0.8
1,891,007	-				-2.8
1,891,007	-				-0.7
1,891,021	+				-0.2
1,891,145	+		ABIE40_RS09805	0.14	-0.5
1,891,145	+		ABIE40_RS09805	0.14	-0.4
1,891,250	+		ABIE40_RS09805	0.21	-0.9
1,891,250	+		ABIE40_RS09805	0.21	+0.1
1,891,250	+		ABIE40_RS09805	0.21	+1.4
1,891,250	+		ABIE40_RS09805	0.21	+0.2
1,891,251	-		ABIE40_RS09805	0.22	+0.3
1,891,251	-		ABIE40_RS09805	0.22	-2.2
1,891,251	-		ABIE40_RS09805	0.22	-0.9
1,891,254	+		ABIE40_RS09805	0.22	-1.0
1,891,254	+		ABIE40_RS09805	0.22	-1.2
1,891,255	-		ABIE40_RS09805	0.22	-0.1
1,891,255	-		ABIE40_RS09805	0.22	-0.4
1,891,323	+		ABIE40_RS09805	0.27	-0.6
1,891,323	+		ABIE40_RS09805	0.27	-0.6
1,891,324	-		ABIE40_RS09805	0.27	+0.2
1,891,616	+		ABIE40_RS09805	0.47	-1.5
1,891,616	+		ABIE40_RS09805	0.47	-0.8
1,891,617	-		ABIE40_RS09805	0.47	-0.5
1,891,793	+		ABIE40_RS09805	0.60	-2.3
1,891,794	-		ABIE40_RS09805	0.60	-0.7
1,891,794	-		ABIE40_RS09805	0.60	-0.3
1,891,794	-		ABIE40_RS09805	0.60	-1.3
1,891,794	-		ABIE40_RS09805	0.60	+1.5
1,891,795	-		ABIE40_RS09805	0.60	-0.9
1,891,798	+		ABIE40_RS09805	0.60	-0.4
1,891,798	+		ABIE40_RS09805	0.60	-1.4
1,891,798	+		ABIE40_RS09805	0.60	+0.8
1,891,798	+		ABIE40_RS09805	0.60	+1.3
1,891,798	+		ABIE40_RS09805	0.60	-3.7
1,891,798	+		ABIE40_RS09805	0.60	+1.3
1,891,799	-		ABIE40_RS09805	0.60	+0.1
1,891,799	-		ABIE40_RS09805	0.60	-0.2
1,891,799	-		ABIE40_RS09805	0.60	-0.5
1,891,799	-		ABIE40_RS09805	0.60	+1.1
1,891,799	-		ABIE40_RS09805	0.60	+1.2
1,891,799	-		ABIE40_RS09805	0.60	-0.4
1,891,799	-		ABIE40_RS09805	0.60	-1.3
1,891,799	-		ABIE40_RS09805	0.60	-0.7
1,891,799	-		ABIE40_RS09805	0.60	-0.5
1,891,820	+		ABIE40_RS09805	0.62	-0.1
1,891,820	+		ABIE40_RS09805	0.62	-0.0
1,891,820	+		ABIE40_RS09805	0.62	-0.2
1,891,820	+		ABIE40_RS09805	0.62	-0.3
1,891,820	+		ABIE40_RS09805	0.62	-0.0
1,891,821	-		ABIE40_RS09805	0.62	-0.4
1,891,821	-		ABIE40_RS09805	0.62	+1.6
1,891,821	-		ABIE40_RS09805	0.62	+0.8
1,891,821	-		ABIE40_RS09805	0.62	-2.6
1,891,821	-		ABIE40_RS09805	0.62	-0.5
1,891,821	-		ABIE40_RS09805	0.62	-2.5
1,891,997	+		ABIE40_RS09805	0.74	+0.7
1,891,997	+		ABIE40_RS09805	0.74	+2.1
1,891,998	-		ABIE40_RS09805	0.74	-1.2
1,891,998	-		ABIE40_RS09805	0.74	-0.3
1,891,998	-		ABIE40_RS09805	0.74	-0.8
1,892,229	+				-0.2
1,892,230	-				+0.8
1,892,297	+				-1.4
1,892,297	+				-0.3
1,892,297	+				-1.5
1,892,297	+				+0.0
1,892,297	+				-0.4
1,892,297	+				-0.5
1,892,298	-				-0.2
1,892,298	-				-0.3
1,892,298	-				+0.7
1,892,301	+				+0.6
1,892,301	+				-0.8
1,892,302	-				+0.5
1,892,302	-				-0.1
1,892,385	+				+0.4
1,892,386	-				-0.2
1,892,393	-				-0.1
1,892,393	-				-1.1
1,892,434	-				-0.6
1,892,434	-				-0.4
1,892,434	-				-0.2
1,892,498	+				-1.2
1,892,568	+				+0.9
1,892,595	+				+0.1
1,892,756	+		ABIE40_RS09810	0.31	-1.8
1,892,756	+		ABIE40_RS09810	0.31	-0.3
1,892,817	+		ABIE40_RS09810	0.43	-1.6
1,892,817	+		ABIE40_RS09810	0.43	-0.2
1,892,818	-		ABIE40_RS09810	0.43	+1.0
1,893,224	+		ABIE40_RS09815	0.11	+1.1
1,893,224	+		ABIE40_RS09815	0.11	+0.6
1,893,236	-		ABIE40_RS09815	0.13	+0.0
1,893,236	-		ABIE40_RS09815	0.13	-0.4
1,893,236	-		ABIE40_RS09815	0.13	+0.3
1,893,236	-		ABIE40_RS09815	0.13	-1.7
1,893,236	-		ABIE40_RS09815	0.13	+0.1
1,893,257	+		ABIE40_RS09815	0.17	+0.5