Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS05980

Experiment: Formate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formate (C)
1,172,608	+				+2.2
1,172,608	+				+0.1
1,172,608	+				+0.6
1,172,608	+				-0.8
1,172,609	-				+0.9
1,172,609	-				-0.7
1,172,609	-				-0.1
1,172,631	+				-0.4
1,172,631	+				-1.1
1,172,632	-				+0.3
1,172,664	+				+2.9
1,172,664	+				-2.0
1,172,664	+				-0.3
1,172,665	-				+1.3
1,172,665	-				-0.2
1,172,665	-				-1.2
1,172,665	-				+2.3
1,172,706	+				+0.4
1,172,706	+				-0.4
1,172,707	-				+0.8
1,172,707	-				+0.4
1,172,707	-				-3.2
1,172,709	+				+0.3
1,172,709	+				+0.2
1,172,709	+				-0.7
1,172,709	+				+0.1
1,172,710	-		ABIE40_RS05975	0.10	+1.1
1,172,710	-		ABIE40_RS05975	0.10	-0.5
1,172,710	-		ABIE40_RS05975	0.10	-0.9
1,172,718	+		ABIE40_RS05975	0.11	+0.7
1,172,718	+		ABIE40_RS05975	0.11	-0.0
1,172,718	+		ABIE40_RS05975	0.11	+0.3
1,172,718	+		ABIE40_RS05975	0.11	-1.4
1,172,745	+		ABIE40_RS05975	0.14	-0.1
1,172,816	-		ABIE40_RS05975	0.23	-1.4
1,172,817	+		ABIE40_RS05975	0.24	-0.8
1,172,817	+		ABIE40_RS05975	0.24	-1.7
1,172,818	-		ABIE40_RS05975	0.24	-2.4
1,172,863	-		ABIE40_RS05975	0.29	+0.3
1,172,863	-		ABIE40_RS05975	0.29	-1.0
1,172,863	-		ABIE40_RS05975	0.29	-0.2
1,172,865	+		ABIE40_RS05975	0.30	-0.1
1,172,865	+		ABIE40_RS05975	0.30	-1.5
1,172,865	+		ABIE40_RS05975	0.30	+2.1
1,172,865	+		ABIE40_RS05975	0.30	-0.2
1,172,865	+		ABIE40_RS05975	0.30	+1.2
1,172,865	+		ABIE40_RS05975	0.30	+1.4
1,172,866	-		ABIE40_RS05975	0.30	+0.3
1,172,866	-		ABIE40_RS05975	0.30	-0.6
1,172,866	-		ABIE40_RS05975	0.30	-0.7
1,172,866	-		ABIE40_RS05975	0.30	-0.7
1,172,866	-		ABIE40_RS05975	0.30	+0.3
1,172,866	-		ABIE40_RS05975	0.30	-0.0
1,172,866	-		ABIE40_RS05975	0.30	-1.9
1,172,866	-		ABIE40_RS05975	0.30	+0.0
1,173,016	-		ABIE40_RS05975	0.49	+1.3
1,173,016	-		ABIE40_RS05975	0.49	-1.3
1,173,016	-		ABIE40_RS05975	0.49	+0.3
1,173,084	+		ABIE40_RS05975	0.57	-0.6
1,173,084	+		ABIE40_RS05975	0.57	+1.2
1,173,084	+		ABIE40_RS05975	0.57	+0.1
1,173,084	+		ABIE40_RS05975	0.57	-0.2
1,173,085	-		ABIE40_RS05975	0.57	-0.1
1,173,085	-		ABIE40_RS05975	0.57	-0.5
1,173,166	+		ABIE40_RS05975	0.67	-0.6
1,173,166	+		ABIE40_RS05975	0.67	-0.1
1,173,166	+		ABIE40_RS05975	0.67	-0.2
1,173,167	-		ABIE40_RS05975	0.68	-0.7
1,173,167	-		ABIE40_RS05975	0.68	-2.2
1,173,167	-		ABIE40_RS05975	0.68	+0.2
1,173,168	+		ABIE40_RS05975	0.68	-1.3
1,173,168	+		ABIE40_RS05975	0.68	+0.1
1,173,168	+		ABIE40_RS05975	0.68	+0.4
1,173,168	+		ABIE40_RS05975	0.68	-1.0
1,173,169	-		ABIE40_RS05975	0.68	-0.4
1,173,169	-		ABIE40_RS05975	0.68	+0.3
1,173,345	+				-0.5
1,173,345	+				-0.8
1,173,345	+				+0.6
1,173,345	+				+0.8
1,173,345	+				+0.1
1,173,345	+				-1.5
1,173,345	+				-0.7
1,173,345	+				-1.5
1,173,346	-				+0.8
1,173,346	-				-0.3
1,173,346	-				+0.4
1,173,346	-				+2.0
1,173,346	-				-0.5
1,173,346	-				+0.1
1,173,346	-				+0.5
1,173,346	-				-2.3
1,173,346	-				+0.8
1,173,346	-				-0.9
1,173,407	+				+0.1
1,173,407	+				-0.4
1,173,407	+				-1.6
1,173,408	-				+0.5
1,173,443	+				+1.3
1,173,443	+				-0.1
1,173,443	+				-0.7
1,173,443	+				-1.3
1,173,444	-				-0.4
1,173,444	-				-0.9
1,173,444	-				-1.6
1,173,444	-				-0.6
1,173,444	-				+1.3
1,173,641	-				+0.7
1,173,751	+		ABIE40_RS05980	0.16	+2.0
1,173,751	+		ABIE40_RS05980	0.16	+0.2
1,173,752	-		ABIE40_RS05980	0.16	-0.7
1,173,752	-		ABIE40_RS05980	0.16	-2.1
1,173,752	-		ABIE40_RS05980	0.16	+0.8
1,174,069	+		ABIE40_RS05980	0.51	-1.0
1,174,069	+		ABIE40_RS05980	0.51	-0.0
1,174,069	+		ABIE40_RS05980	0.51	-0.1
1,174,069	+		ABIE40_RS05980	0.51	-0.8
1,174,069	+		ABIE40_RS05980	0.51	-0.3
1,174,069	+		ABIE40_RS05980	0.51	-2.5
1,174,069	+		ABIE40_RS05980	0.51	-0.3
1,174,069	+		ABIE40_RS05980	0.51	-0.3
1,174,070	-		ABIE40_RS05980	0.51	+0.8
1,174,129	+		ABIE40_RS05980	0.57	-1.3
1,174,129	+		ABIE40_RS05980	0.57	-0.4
1,174,130	-		ABIE40_RS05980	0.57	+0.5
1,174,130	-		ABIE40_RS05980	0.57	+0.6
1,174,130	-		ABIE40_RS05980	0.57	+1.3
1,174,130	-		ABIE40_RS05980	0.57	+0.3
1,174,217	-		ABIE40_RS05980	0.67	+0.9
1,174,527	+				-0.4
1,174,527	+				+0.7
1,174,527	+				-0.6
1,174,527	+				+0.6
1,174,528	-				+0.8
1,174,710	+				+0.7
1,174,710	+				+0.6
1,174,710	+				+0.4
1,174,711	-				+0.3
1,174,711	-				+0.3
1,174,756	+				+1.0
1,174,756	+				-1.0
1,174,756	+				+0.9
1,174,756	+				+0.6
1,174,757	-				-0.5
1,174,757	-				+0.0
1,174,877	+				-3.0
1,174,877	+				-0.6
1,174,878	-				-0.3
1,174,878	-				-0.1
1,174,878	-				-0.4
1,175,002	+		ABIE40_RS05985	0.15	-0.1
1,175,003	-		ABIE40_RS05985	0.15	+0.3
1,175,152	+		ABIE40_RS05985	0.23	-0.3
1,175,152	+		ABIE40_RS05985	0.23	+0.3
1,175,152	+		ABIE40_RS05985	0.23	-0.7
1,175,152	+		ABIE40_RS05985	0.23	+0.1
1,175,152	+		ABIE40_RS05985	0.23	-0.1
1,175,152	+		ABIE40_RS05985	0.23	-1.0
1,175,152	+		ABIE40_RS05985	0.23	+0.8
1,175,152	+		ABIE40_RS05985	0.23	+0.5
1,175,152	+		ABIE40_RS05985	0.23	+0.4
1,175,152	+		ABIE40_RS05985	0.23	+0.2
1,175,153	-		ABIE40_RS05985	0.23	+0.3
1,175,153	-		ABIE40_RS05985	0.23	-0.2
1,175,153	-		ABIE40_RS05985	0.23	-0.2
1,175,231	-		ABIE40_RS05985	0.27	-0.3
1,175,231	-		ABIE40_RS05985	0.27	-0.5
1,175,251	+		ABIE40_RS05985	0.29	-0.0
1,175,251	+		ABIE40_RS05985	0.29	-0.3
1,175,252	-		ABIE40_RS05985	0.29	-0.2
1,175,252	-		ABIE40_RS05985	0.29	-0.2
1,175,252	-		ABIE40_RS05985	0.29	+1.6
1,175,263	+		ABIE40_RS05985	0.29	+1.3
1,175,263	+		ABIE40_RS05985	0.29	+1.9
1,175,263	+		ABIE40_RS05985	0.29	-0.8
1,175,263	+		ABIE40_RS05985	0.29	-1.7
1,175,263	+		ABIE40_RS05985	0.29	+0.6
1,175,263	+		ABIE40_RS05985	0.29	-0.2
1,175,263	+		ABIE40_RS05985	0.29	-1.1
1,175,264	-		ABIE40_RS05985	0.29	+0.3
1,175,264	-		ABIE40_RS05985	0.29	+0.3
1,175,264	-		ABIE40_RS05985	0.29	+2.9
1,175,264	-		ABIE40_RS05985	0.29	+0.7