Experiment: Formate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS03775 and ABIE40_RS03780 are separated by 106 nucleotides ABIE40_RS03780 and ABIE40_RS03785 are separated by 14 nucleotides ABIE40_RS03785 and ABIE40_RS03790 are separated by 61 nucleotides
ABIE40_RS03775: ABIE40_RS03775 - monovalent cation:proton antiporter-2 (CPA2) family protein, at 745,463 to 747,277
_RS03775
ABIE40_RS03780: ABIE40_RS03780 - TldD/PmbA family protein, at 747,384 to 748,730
_RS03780
ABIE40_RS03785: ABIE40_RS03785 - 3'(2'),5'-bisphosphate nucleotidase CysQ, at 748,745 to 749,554
_RS03785
ABIE40_RS03790: ABIE40_RS03790 - DUF4170 domain-containing protein, at 749,616 to 749,864
_RS03790
Position (kb) 747
748
749 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 746.452 kb on + strand, within ABIE40_RS03775 at 746.452 kb on + strand, within ABIE40_RS03775 at 746.483 kb on - strand, within ABIE40_RS03775 at 746.505 kb on + strand, within ABIE40_RS03775 at 746.673 kb on + strand, within ABIE40_RS03775 at 746.673 kb on + strand, within ABIE40_RS03775 at 746.674 kb on - strand, within ABIE40_RS03775 at 746.674 kb on - strand, within ABIE40_RS03775 at 746.674 kb on - strand, within ABIE40_RS03775 at 746.674 kb on - strand, within ABIE40_RS03775 at 746.842 kb on - strand, within ABIE40_RS03775 at 746.842 kb on - strand, within ABIE40_RS03775 at 746.848 kb on + strand, within ABIE40_RS03775 at 746.848 kb on + strand, within ABIE40_RS03775 at 746.958 kb on + strand, within ABIE40_RS03775 at 746.959 kb on - strand, within ABIE40_RS03775 at 747.127 kb on + strand at 747.171 kb on + strand at 747.172 kb on - strand at 747.355 kb on + strand at 747.356 kb on - strand at 747.897 kb on + strand, within ABIE40_RS03780 at 747.897 kb on + strand, within ABIE40_RS03780 at 747.897 kb on + strand, within ABIE40_RS03780 at 747.897 kb on + strand, within ABIE40_RS03780 at 747.897 kb on + strand, within ABIE40_RS03780 at 747.897 kb on + strand, within ABIE40_RS03780 at 747.897 kb on + strand, within ABIE40_RS03780 at 747.897 kb on + strand, within ABIE40_RS03780 at 747.897 kb on + strand, within ABIE40_RS03780 at 747.897 kb on + strand, within ABIE40_RS03780 at 747.898 kb on - strand, within ABIE40_RS03780 at 747.898 kb on - strand, within ABIE40_RS03780 at 747.898 kb on - strand, within ABIE40_RS03780 at 747.898 kb on - strand, within ABIE40_RS03780 at 747.898 kb on - strand, within ABIE40_RS03780 at 747.898 kb on - strand, within ABIE40_RS03780 at 747.898 kb on - strand, within ABIE40_RS03780 at 747.899 kb on + strand, within ABIE40_RS03780 at 747.899 kb on + strand, within ABIE40_RS03780 at 747.900 kb on - strand, within ABIE40_RS03780 at 747.900 kb on - strand, within ABIE40_RS03780 at 747.900 kb on - strand, within ABIE40_RS03780 at 747.900 kb on - strand, within ABIE40_RS03780 at 747.900 kb on - strand, within ABIE40_RS03780 at 747.900 kb on - strand, within ABIE40_RS03780 at 747.900 kb on - strand, within ABIE40_RS03780 at 747.967 kb on - strand, within ABIE40_RS03780 at 747.987 kb on + strand, within ABIE40_RS03780 at 747.988 kb on - strand, within ABIE40_RS03780 at 747.990 kb on + strand, within ABIE40_RS03780 at 747.990 kb on + strand, within ABIE40_RS03780 at 747.990 kb on + strand, within ABIE40_RS03780 at 747.990 kb on + strand, within ABIE40_RS03780 at 747.991 kb on - strand, within ABIE40_RS03780 at 748.451 kb on + strand, within ABIE40_RS03780 at 748.452 kb on - strand, within ABIE40_RS03780 at 748.452 kb on - strand, within ABIE40_RS03780 at 748.494 kb on + strand, within ABIE40_RS03780 at 748.494 kb on + strand, within ABIE40_RS03780 at 748.494 kb on + strand, within ABIE40_RS03780 at 748.494 kb on + strand, within ABIE40_RS03780 at 748.495 kb on - strand, within ABIE40_RS03780 at 748.661 kb on + strand at 748.674 kb on + strand at 748.674 kb on + strand at 748.675 kb on - strand at 748.833 kb on - strand, within ABIE40_RS03785 at 748.949 kb on + strand, within ABIE40_RS03785 at 748.949 kb on + strand, within ABIE40_RS03785 at 748.950 kb on - strand, within ABIE40_RS03785 at 748.950 kb on - strand, within ABIE40_RS03785 at 748.950 kb on - strand, within ABIE40_RS03785 at 749.117 kb on + strand, within ABIE40_RS03785 at 749.117 kb on + strand, within ABIE40_RS03785 at 749.118 kb on - strand, within ABIE40_RS03785 at 749.312 kb on + strand, within ABIE40_RS03785 at 749.312 kb on + strand, within ABIE40_RS03785 at 749.312 kb on + strand, within ABIE40_RS03785 at 749.312 kb on + strand, within ABIE40_RS03785 at 749.312 kb on + strand, within ABIE40_RS03785 at 749.343 kb on + strand, within ABIE40_RS03785 at 749.344 kb on - strand, within ABIE40_RS03785 at 749.456 kb on + strand, within ABIE40_RS03785 at 749.456 kb on + strand, within ABIE40_RS03785 at 749.456 kb on + strand, within ABIE40_RS03785 at 749.456 kb on + strand, within ABIE40_RS03785 at 749.457 kb on - strand, within ABIE40_RS03785 at 749.542 kb on - strand at 749.634 kb on - strand at 749.634 kb on - strand at 749.634 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate (C) remove 746,452 + ABIE40_RS03775 0.54 +1.0 746,452 + ABIE40_RS03775 0.54 -1.2 746,483 - ABIE40_RS03775 0.56 -1.2 746,505 + ABIE40_RS03775 0.57 +0.3 746,673 + ABIE40_RS03775 0.67 +0.0 746,673 + ABIE40_RS03775 0.67 -0.4 746,674 - ABIE40_RS03775 0.67 -0.3 746,674 - ABIE40_RS03775 0.67 +0.4 746,674 - ABIE40_RS03775 0.67 -0.0 746,674 - ABIE40_RS03775 0.67 +3.1 746,842 - ABIE40_RS03775 0.76 +0.7 746,842 - ABIE40_RS03775 0.76 -0.3 746,848 + ABIE40_RS03775 0.76 -0.6 746,848 + ABIE40_RS03775 0.76 -0.8 746,958 + ABIE40_RS03775 0.82 +0.8 746,959 - ABIE40_RS03775 0.82 -0.2 747,127 + +0.3 747,171 + +2.1 747,172 - +0.1 747,355 + -0.2 747,356 - -0.9 747,897 + ABIE40_RS03780 0.38 -0.1 747,897 + ABIE40_RS03780 0.38 +0.5 747,897 + ABIE40_RS03780 0.38 -1.3 747,897 + ABIE40_RS03780 0.38 +0.8 747,897 + ABIE40_RS03780 0.38 +0.4 747,897 + ABIE40_RS03780 0.38 -0.7 747,897 + ABIE40_RS03780 0.38 +0.2 747,897 + ABIE40_RS03780 0.38 +1.0 747,897 + ABIE40_RS03780 0.38 -0.1 747,897 + ABIE40_RS03780 0.38 -1.3 747,898 - ABIE40_RS03780 0.38 -0.4 747,898 - ABIE40_RS03780 0.38 -0.1 747,898 - ABIE40_RS03780 0.38 +1.5 747,898 - ABIE40_RS03780 0.38 -0.5 747,898 - ABIE40_RS03780 0.38 -1.1 747,898 - ABIE40_RS03780 0.38 -0.1 747,898 - ABIE40_RS03780 0.38 +1.5 747,899 + ABIE40_RS03780 0.38 +0.0 747,899 + ABIE40_RS03780 0.38 +0.5 747,900 - ABIE40_RS03780 0.38 +0.6 747,900 - ABIE40_RS03780 0.38 +1.2 747,900 - ABIE40_RS03780 0.38 -0.2 747,900 - ABIE40_RS03780 0.38 +0.8 747,900 - ABIE40_RS03780 0.38 -0.4 747,900 - ABIE40_RS03780 0.38 +0.4 747,900 - ABIE40_RS03780 0.38 +0.8 747,967 - ABIE40_RS03780 0.43 +1.7 747,987 + ABIE40_RS03780 0.45 -1.9 747,988 - ABIE40_RS03780 0.45 -0.1 747,990 + ABIE40_RS03780 0.45 -0.4 747,990 + ABIE40_RS03780 0.45 -1.8 747,990 + ABIE40_RS03780 0.45 +0.6 747,990 + ABIE40_RS03780 0.45 +2.1 747,991 - ABIE40_RS03780 0.45 -3.4 748,451 + ABIE40_RS03780 0.79 +1.1 748,452 - ABIE40_RS03780 0.79 +0.0 748,452 - ABIE40_RS03780 0.79 -1.0 748,494 + ABIE40_RS03780 0.82 -1.4 748,494 + ABIE40_RS03780 0.82 +1.0 748,494 + ABIE40_RS03780 0.82 -0.6 748,494 + ABIE40_RS03780 0.82 +0.6 748,495 - ABIE40_RS03780 0.82 -1.1 748,661 + -1.7 748,674 + -1.8 748,674 + +0.8 748,675 - +1.2 748,833 - ABIE40_RS03785 0.11 -0.7 748,949 + ABIE40_RS03785 0.25 -0.5 748,949 + ABIE40_RS03785 0.25 -1.3 748,950 - ABIE40_RS03785 0.25 -0.5 748,950 - ABIE40_RS03785 0.25 -0.5 748,950 - ABIE40_RS03785 0.25 -0.7 749,117 + ABIE40_RS03785 0.46 -2.5 749,117 + ABIE40_RS03785 0.46 -0.7 749,118 - ABIE40_RS03785 0.46 -0.8 749,312 + ABIE40_RS03785 0.70 +0.4 749,312 + ABIE40_RS03785 0.70 -0.8 749,312 + ABIE40_RS03785 0.70 +0.2 749,312 + ABIE40_RS03785 0.70 -0.6 749,312 + ABIE40_RS03785 0.70 +0.0 749,343 + ABIE40_RS03785 0.74 -2.1 749,344 - ABIE40_RS03785 0.74 +0.8 749,456 + ABIE40_RS03785 0.88 -2.0 749,456 + ABIE40_RS03785 0.88 -0.5 749,456 + ABIE40_RS03785 0.88 -0.3 749,456 + ABIE40_RS03785 0.88 -0.5 749,457 - ABIE40_RS03785 0.88 -1.3 749,542 - +0.8 749,634 - +0.4 749,634 - -0.0 749,634 - +0.5
Or see this region's nucleotide sequence