Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS00505

Experiment: Formate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formate (C)
105,155	+		ABIE40_RS00495	0.83	-1.2
105,155	+		ABIE40_RS00495	0.83	+1.2
105,155	+		ABIE40_RS00495	0.83	-1.1
105,156	-		ABIE40_RS00495	0.83	-0.9
105,267	+		ABIE40_RS00495	0.88	-0.3
105,267	+		ABIE40_RS00495	0.88	+3.8
105,268	-		ABIE40_RS00495	0.88	-1.2
105,369	+				-0.2
105,370	-				-0.9
105,370	-				-0.4
105,420	+				+1.5
105,421	-				-1.4
105,421	-				+0.9
105,447	+				+0.5
105,449	+				+2.5
105,450	-				+1.4
105,555	+				-0.4
105,555	+				+1.2
105,556	-				+0.4
105,592	+				-0.6
105,592	+				-0.2
105,593	-				-0.4
105,593	-				-0.4
105,593	-				+0.8
105,646	+		ABIE40_RS00500	0.11	-0.1
105,646	+		ABIE40_RS00500	0.11	+1.9
105,646	+		ABIE40_RS00500	0.11	+0.9
105,647	-		ABIE40_RS00500	0.11	+0.7
105,647	-		ABIE40_RS00500	0.11	-1.8
105,648	-		ABIE40_RS00500	0.11	+1.1
105,649	+		ABIE40_RS00500	0.12	+0.4
105,649	+		ABIE40_RS00500	0.12	-0.8
105,649	+		ABIE40_RS00500	0.12	-0.7
105,649	+		ABIE40_RS00500	0.12	-0.3
105,649	+		ABIE40_RS00500	0.12	+0.3
105,650	-		ABIE40_RS00500	0.12	+0.1
105,650	-		ABIE40_RS00500	0.12	+0.0
105,700	+		ABIE40_RS00500	0.22	-0.4
105,701	-		ABIE40_RS00500	0.22	+0.8
105,733	+		ABIE40_RS00500	0.29	+0.5
105,787	+		ABIE40_RS00500	0.39	-0.0
105,802	+		ABIE40_RS00500	0.42	-1.7
105,802	+		ABIE40_RS00500	0.42	-0.4
105,802	+		ABIE40_RS00500	0.42	-0.4
105,802	+		ABIE40_RS00500	0.42	-0.7
105,803	-		ABIE40_RS00500	0.43	+0.0
105,803	-		ABIE40_RS00500	0.43	-0.8
105,803	-		ABIE40_RS00500	0.43	+0.4
105,818	+		ABIE40_RS00500	0.46	-0.5
105,841	+		ABIE40_RS00500	0.50	-1.1
105,841	+		ABIE40_RS00500	0.50	-0.1
105,841	+		ABIE40_RS00500	0.50	+0.5
105,841	+		ABIE40_RS00500	0.50	+1.1
105,842	-		ABIE40_RS00500	0.50	+0.7
105,842	-		ABIE40_RS00500	0.50	-1.0
105,842	-		ABIE40_RS00500	0.50	-0.1
105,842	-		ABIE40_RS00500	0.50	-1.0
105,842	-		ABIE40_RS00500	0.50	+0.2
105,856	+		ABIE40_RS00500	0.53	+0.6
105,856	+		ABIE40_RS00500	0.53	+0.8
105,856	+		ABIE40_RS00500	0.53	+0.1
105,857	-		ABIE40_RS00500	0.53	-1.6
105,857	-		ABIE40_RS00500	0.53	-1.2
105,857	-		ABIE40_RS00500	0.53	-0.2
105,857	-		ABIE40_RS00500	0.53	+0.0
105,857	-		ABIE40_RS00500	0.53	-0.9
105,857	-		ABIE40_RS00500	0.53	-0.2
105,857	-		ABIE40_RS00500	0.53	-1.2
105,857	-		ABIE40_RS00500	0.53	+0.5
105,857	-		ABIE40_RS00500	0.53	-2.5
106,028	+		ABIE40_RS00500	0.88	+0.9
106,029	-		ABIE40_RS00500	0.88	+0.4
106,066	+				-0.4
106,066	+				-1.0
106,066	+				+0.1
106,066	+				+0.7
106,066	+				+0.4
106,066	+				-0.4
106,066	+				+1.1
106,066	+				+1.6
106,067	-				-0.7
106,067	-				-2.5
106,067	-				+0.6
106,173	-		ABIE40_RS00505	0.12	-2.6
106,195	+		ABIE40_RS00505	0.16	-0.6
106,195	+		ABIE40_RS00505	0.16	-0.6
106,195	+		ABIE40_RS00505	0.16	+0.8
106,196	-		ABIE40_RS00505	0.16	-1.1
106,196	-		ABIE40_RS00505	0.16	-0.6
106,196	-		ABIE40_RS00505	0.16	+1.1
106,196	-		ABIE40_RS00505	0.16	+0.2
106,196	-		ABIE40_RS00505	0.16	-0.8
106,287	+		ABIE40_RS00505	0.31	-1.2
106,287	+		ABIE40_RS00505	0.31	-0.1
106,288	-		ABIE40_RS00505	0.31	-0.3
106,288	-		ABIE40_RS00505	0.31	+0.3
106,288	-		ABIE40_RS00505	0.31	-0.4
106,426	+		ABIE40_RS00505	0.54	+0.6
106,427	-		ABIE40_RS00505	0.54	-0.1
106,427	-		ABIE40_RS00505	0.54	+1.6
106,610	+		ABIE40_RS00505	0.85	-0.2
106,610	+		ABIE40_RS00505	0.85	-0.6
106,611	-		ABIE40_RS00505	0.85	+1.4
106,760	+				+1.6
106,905	+		ABIE40_RS00510	0.18	-0.1
106,905	+		ABIE40_RS00510	0.18	-0.3
106,906	-		ABIE40_RS00510	0.18	+2.0
106,906	-		ABIE40_RS00510	0.18	-1.4
106,906	-		ABIE40_RS00510	0.18	+1.1
106,906	-		ABIE40_RS00510	0.18	+0.5
106,926	+		ABIE40_RS00510	0.20	-1.2
106,926	+		ABIE40_RS00510	0.20	+0.3
106,926	+		ABIE40_RS00510	0.20	+0.5
106,926	+		ABIE40_RS00510	0.20	-1.7
106,927	-		ABIE40_RS00510	0.20	-0.4
106,927	-		ABIE40_RS00510	0.20	-1.4
107,289	+		ABIE40_RS00510	0.52	-0.9
107,289	+		ABIE40_RS00510	0.52	-1.2
107,289	+		ABIE40_RS00510	0.52	+0.5
107,290	-		ABIE40_RS00510	0.52	+0.3
107,290	-		ABIE40_RS00510	0.52	-0.3
107,298	+		ABIE40_RS00510	0.53	+0.5
107,298	+		ABIE40_RS00510	0.53	-0.8
107,298	+		ABIE40_RS00510	0.53	-0.7
107,298	+		ABIE40_RS00510	0.53	-0.4
107,298	+		ABIE40_RS00510	0.53	-0.3
107,298	+		ABIE40_RS00510	0.53	+0.4
107,298	+		ABIE40_RS00510	0.53	-0.4
107,299	-		ABIE40_RS00510	0.53	+0.7
107,299	-		ABIE40_RS00510	0.53	-0.8
107,299	-		ABIE40_RS00510	0.53	+0.3
107,299	-		ABIE40_RS00510	0.53	+0.3
107,299	-		ABIE40_RS00510	0.53	-0.1
107,364	+		ABIE40_RS00510	0.59	+1.2
107,364	+		ABIE40_RS00510	0.59	-0.3
107,364	+		ABIE40_RS00510	0.59	+0.5
107,364	+		ABIE40_RS00510	0.59	+1.2
107,365	-		ABIE40_RS00510	0.59	+0.9
107,365	-		ABIE40_RS00510	0.59	+0.1
107,365	-		ABIE40_RS00510	0.59	-0.2
107,365	-		ABIE40_RS00510	0.59	+0.7
107,365	-		ABIE40_RS00510	0.59	+0.8
107,492	-		ABIE40_RS00510	0.70	-2.4
107,492	-		ABIE40_RS00510	0.70	+0.4
107,643	+		ABIE40_RS00510	0.83	-0.5
107,643	+		ABIE40_RS00510	0.83	+0.2
107,644	-		ABIE40_RS00510	0.83	-0.7
107,692	+		ABIE40_RS00510	0.87	+0.2
107,694	+		ABIE40_RS00510	0.87	-0.6
107,694	+		ABIE40_RS00510	0.87	-0.4
107,695	-		ABIE40_RS00510	0.88	-1.6
107,695	-		ABIE40_RS00510	0.88	-0.3
107,695	-		ABIE40_RS00510	0.88	+0.1