Strain Fitness in Variovorax sp. OAS795 around ABID97_RS27365

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS27360 and ABID97_RS27365 are separated by 162 nucleotidesABID97_RS27365 and ABID97_RS27370 are separated by 148 nucleotidesABID97_RS27370 and ABID97_RS27375 are separated by 13 nucleotides ABID97_RS27360: ABID97_RS27360 - aspartate transaminase, at 389,789 to 390,997 _RS27360 ABID97_RS27365: ABID97_RS27365 - nitrogen assimilation transcriptional regulator NAC, at 391,160 to 392,098 _RS27365 ABID97_RS27370: ABID97_RS27370 - acetyl-CoA carboxylase biotin carboxyl carrier protein subunit, at 392,247 to 392,681 _RS27370 ABID97_RS27375: ABID97_RS27375 - acetyl-CoA carboxylase biotin carboxylase subunit, at 392,695 to 394,047 _RS27375 Position (kb) 391 392 393Strain fitness (log2 ratio) -1 0 1at 390.243 kb on + strand, within ABID97_RS27360at 390.679 kb on - strand, within ABID97_RS27360at 390.679 kb on - strand, within ABID97_RS27360at 391.036 kb on - strandat 391.080 kb on + strandat 391.093 kb on + strandat 391.132 kb on - strandat 391.749 kb on - strand, within ABID97_RS27365at 392.313 kb on + strand, within ABID97_RS27370

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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390,243 + ABID97_RS27360 0.38 -0.2
390,679 - ABID97_RS27360 0.74 -0.1
390,679 - ABID97_RS27360 0.74 +0.8
391,036 - +0.1
391,080 + -0.3
391,093 + -0.6
391,132 - -0.1
391,749 - ABID97_RS27365 0.63 -1.2
392,313 + ABID97_RS27370 0.15 -0.7

Or see this region's nucleotide sequence