Strain Fitness in Variovorax sp. OAS795 around ABID97_RS26715

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS26710 and ABID97_RS26715 are separated by 64 nucleotidesABID97_RS26715 and ABID97_RS26720 are separated by 55 nucleotides ABID97_RS26710: ABID97_RS26710 - Ku protein, at 265,995 to 266,933 _RS26710 ABID97_RS26715: ABID97_RS26715 - DUF4337 domain-containing protein, at 266,998 to 267,630 _RS26715 ABID97_RS26720: ABID97_RS26720 - LysR substrate-binding domain-containing protein, at 267,686 to 268,630 _RS26720 Position (kb) 266 267 268Strain fitness (log2 ratio) -1 0 1at 266.218 kb on - strand, within ABID97_RS26710at 266.254 kb on - strand, within ABID97_RS26710at 266.334 kb on + strand, within ABID97_RS26710at 266.337 kb on + strand, within ABID97_RS26710at 266.338 kb on - strand, within ABID97_RS26710at 266.370 kb on + strand, within ABID97_RS26710at 266.370 kb on + strand, within ABID97_RS26710at 267.350 kb on + strand, within ABID97_RS26715at 267.401 kb on + strand, within ABID97_RS26715at 267.401 kb on + strand, within ABID97_RS26715at 267.402 kb on - strand, within ABID97_RS26715at 267.437 kb on + strand, within ABID97_RS26715at 267.438 kb on - strand, within ABID97_RS26715at 267.438 kb on - strand, within ABID97_RS26715at 267.672 kb on + strandat 267.673 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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266,218 - ABID97_RS26710 0.24 -0.6
266,254 - ABID97_RS26710 0.28 -0.1
266,334 + ABID97_RS26710 0.36 -1.4
266,337 + ABID97_RS26710 0.36 +0.4
266,338 - ABID97_RS26710 0.37 +0.3
266,370 + ABID97_RS26710 0.40 -0.6
266,370 + ABID97_RS26710 0.40 -0.6
267,350 + ABID97_RS26715 0.56 -0.7
267,401 + ABID97_RS26715 0.64 +0.2
267,401 + ABID97_RS26715 0.64 -0.3
267,402 - ABID97_RS26715 0.64 +1.0
267,437 + ABID97_RS26715 0.69 -0.4
267,438 - ABID97_RS26715 0.70 -0.2
267,438 - ABID97_RS26715 0.70 -0.1
267,672 + +0.4
267,673 - -0.7

Or see this region's nucleotide sequence