Strain Fitness in Variovorax sp. OAS795 around ABID97_RS25900

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS25890 and ABID97_RS25895 overlap by 1 nucleotidesABID97_RS25895 and ABID97_RS25900 are separated by 10 nucleotidesABID97_RS25900 and ABID97_RS25905 are separated by 40 nucleotides ABID97_RS25890: ABID97_RS25890 - ABC transporter ATP-binding protein, at 99,732 to 101,387 _RS25890 ABID97_RS25895: ABID97_RS25895 - ABC transporter permease, at 101,387 to 102,292 _RS25895 ABID97_RS25900: ABID97_RS25900 - ABC transporter permease, at 102,303 to 103,259 _RS25900 ABID97_RS25905: ABID97_RS25905 - ABC transporter substrate-binding protein, at 103,300 to 104,922 _RS25905 Position (kb) 102 103 104Strain fitness (log2 ratio) -2 -1 0 1at 101.679 kb on + strand, within ABID97_RS25895at 101.778 kb on + strand, within ABID97_RS25895at 101.779 kb on - strand, within ABID97_RS25895at 102.461 kb on - strand, within ABID97_RS25900at 103.464 kb on - strand, within ABID97_RS25905at 104.258 kb on + strand, within ABID97_RS25905

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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101,679 + ABID97_RS25895 0.32 -0.7
101,778 + ABID97_RS25895 0.43 -1.7
101,779 - ABID97_RS25895 0.43 -0.0
102,461 - ABID97_RS25900 0.17 -2.4
103,464 - ABID97_RS25905 0.10 -0.1
104,258 + ABID97_RS25905 0.59 +0.6

Or see this region's nucleotide sequence