Strain Fitness in Variovorax sp. OAS795 around ABID97_RS25190

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS25180 and ABID97_RS25185 are separated by 39 nucleotidesABID97_RS25185 and ABID97_RS25190 are separated by 4 nucleotidesABID97_RS25190 and ABID97_RS25195 are separated by 54 nucleotides ABID97_RS25180: ABID97_RS25180 - MerR family DNA-binding transcriptional regulator, at 5,216,841 to 5,217,239 _RS25180 ABID97_RS25185: ABID97_RS25185 - carbonate dehydratase, at 5,217,279 to 5,218,055 _RS25185 ABID97_RS25190: ABID97_RS25190 - bifunctional isocitrate dehydrogenase kinase/phosphatase, at 5,218,060 to 5,219,880 _RS25190 ABID97_RS25195: ABID97_RS25195 - acetyl-CoA C-acyltransferase, at 5,219,935 to 5,221,119 _RS25195 Position (kb) 5218 5219 5220Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 5218.093 kb on + strandat 5218.094 kb on - strandat 5218.094 kb on - strandat 5218.135 kb on + strandat 5218.135 kb on + strandat 5218.135 kb on + strandat 5218.135 kb on + strandat 5218.136 kb on - strandat 5218.235 kb on - strandat 5218.417 kb on + strand, within ABID97_RS25190at 5218.466 kb on - strand, within ABID97_RS25190at 5218.502 kb on - strand, within ABID97_RS25190at 5218.502 kb on - strand, within ABID97_RS25190at 5218.702 kb on + strand, within ABID97_RS25190at 5218.783 kb on + strand, within ABID97_RS25190at 5218.783 kb on + strand, within ABID97_RS25190at 5218.783 kb on + strand, within ABID97_RS25190at 5218.784 kb on - strand, within ABID97_RS25190at 5218.784 kb on - strand, within ABID97_RS25190at 5218.784 kb on - strand, within ABID97_RS25190at 5218.930 kb on + strand, within ABID97_RS25190at 5218.931 kb on - strand, within ABID97_RS25190at 5218.973 kb on - strand, within ABID97_RS25190at 5219.104 kb on + strand, within ABID97_RS25190at 5219.150 kb on - strand, within ABID97_RS25190at 5219.150 kb on - strand, within ABID97_RS25190at 5219.150 kb on - strand, within ABID97_RS25190at 5219.204 kb on - strand, within ABID97_RS25190at 5219.339 kb on - strand, within ABID97_RS25190at 5219.339 kb on - strand, within ABID97_RS25190at 5219.371 kb on + strand, within ABID97_RS25190at 5219.371 kb on + strand, within ABID97_RS25190at 5219.372 kb on - strand, within ABID97_RS25190at 5219.372 kb on - strand, within ABID97_RS25190at 5219.372 kb on - strand, within ABID97_RS25190at 5219.372 kb on - strand, within ABID97_RS25190at 5219.465 kb on - strand, within ABID97_RS25190at 5219.563 kb on + strand, within ABID97_RS25190at 5219.563 kb on + strand, within ABID97_RS25190at 5219.563 kb on + strand, within ABID97_RS25190at 5219.564 kb on - strand, within ABID97_RS25190at 5219.564 kb on - strand, within ABID97_RS25190at 5219.569 kb on + strand, within ABID97_RS25190at 5219.584 kb on + strand, within ABID97_RS25190at 5219.584 kb on + strand, within ABID97_RS25190at 5219.584 kb on + strand, within ABID97_RS25190at 5219.584 kb on + strand, within ABID97_RS25190at 5219.585 kb on - strand, within ABID97_RS25190at 5219.585 kb on - strand, within ABID97_RS25190at 5219.585 kb on - strand, within ABID97_RS25190at 5219.585 kb on - strand, within ABID97_RS25190at 5219.659 kb on + strand, within ABID97_RS25190at 5219.830 kb on + strandat 5220.148 kb on + strand, within ABID97_RS25195at 5220.148 kb on + strand, within ABID97_RS25195at 5220.149 kb on - strand, within ABID97_RS25195at 5220.392 kb on - strand, within ABID97_RS25195at 5220.442 kb on + strand, within ABID97_RS25195at 5220.442 kb on + strand, within ABID97_RS25195at 5220.442 kb on + strand, within ABID97_RS25195at 5220.443 kb on - strand, within ABID97_RS25195at 5220.443 kb on - strand, within ABID97_RS25195at 5220.443 kb on - strand, within ABID97_RS25195

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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5,218,093 + -3.9
5,218,094 - -4.6
5,218,094 - -4.3
5,218,135 + -1.3
5,218,135 + -6.7
5,218,135 + -0.9
5,218,135 + -3.6
5,218,136 - -1.1
5,218,235 - -4.4
5,218,417 + ABID97_RS25190 0.20 +1.7
5,218,466 - ABID97_RS25190 0.22 -2.6
5,218,502 - ABID97_RS25190 0.24 -6.3
5,218,502 - ABID97_RS25190 0.24 -3.6
5,218,702 + ABID97_RS25190 0.35 -3.7
5,218,783 + ABID97_RS25190 0.40 -4.6
5,218,783 + ABID97_RS25190 0.40 -2.0
5,218,783 + ABID97_RS25190 0.40 -3.5
5,218,784 - ABID97_RS25190 0.40 -3.8
5,218,784 - ABID97_RS25190 0.40 -7.3
5,218,784 - ABID97_RS25190 0.40 -4.2
5,218,930 + ABID97_RS25190 0.48 -5.4
5,218,931 - ABID97_RS25190 0.48 -2.3
5,218,973 - ABID97_RS25190 0.50 -1.1
5,219,104 + ABID97_RS25190 0.57 -4.2
5,219,150 - ABID97_RS25190 0.60 -5.6
5,219,150 - ABID97_RS25190 0.60 -5.3
5,219,150 - ABID97_RS25190 0.60 -6.9
5,219,204 - ABID97_RS25190 0.63 -4.7
5,219,339 - ABID97_RS25190 0.70 -6.4
5,219,339 - ABID97_RS25190 0.70 -2.1
5,219,371 + ABID97_RS25190 0.72 -4.2
5,219,371 + ABID97_RS25190 0.72 -5.6
5,219,372 - ABID97_RS25190 0.72 -1.3
5,219,372 - ABID97_RS25190 0.72 -1.8
5,219,372 - ABID97_RS25190 0.72 -5.0
5,219,372 - ABID97_RS25190 0.72 -0.6
5,219,465 - ABID97_RS25190 0.77 -3.3
5,219,563 + ABID97_RS25190 0.83 -3.6
5,219,563 + ABID97_RS25190 0.83 -4.3
5,219,563 + ABID97_RS25190 0.83 +0.0
5,219,564 - ABID97_RS25190 0.83 -3.3
5,219,564 - ABID97_RS25190 0.83 -3.4
5,219,569 + ABID97_RS25190 0.83 -4.7
5,219,584 + ABID97_RS25190 0.84 +0.1
5,219,584 + ABID97_RS25190 0.84 -5.5
5,219,584 + ABID97_RS25190 0.84 -5.5
5,219,584 + ABID97_RS25190 0.84 -3.2
5,219,585 - ABID97_RS25190 0.84 -4.2
5,219,585 - ABID97_RS25190 0.84 -1.8
5,219,585 - ABID97_RS25190 0.84 -4.9
5,219,585 - ABID97_RS25190 0.84 -3.5
5,219,659 + ABID97_RS25190 0.88 -4.5
5,219,830 + -1.1
5,220,148 + ABID97_RS25195 0.18 +0.3
5,220,148 + ABID97_RS25195 0.18 -0.1
5,220,149 - ABID97_RS25195 0.18 -0.7
5,220,392 - ABID97_RS25195 0.39 -0.2
5,220,442 + ABID97_RS25195 0.43 -0.9
5,220,442 + ABID97_RS25195 0.43 -0.9
5,220,442 + ABID97_RS25195 0.43 +0.2
5,220,443 - ABID97_RS25195 0.43 +0.0
5,220,443 - ABID97_RS25195 0.43 -0.8
5,220,443 - ABID97_RS25195 0.43 -1.0

Or see this region's nucleotide sequence