Experiment: L-Leucine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS24420 and ABID97_RS24425 are separated by 74 nucleotides ABID97_RS24425 and ABID97_RS24430 are separated by 27 nucleotides ABID97_RS24430 and ABID97_RS24435 are separated by 114 nucleotides ABID97_RS24435 and ABID97_RS24440 are separated by 25 nucleotides
ABID97_RS24420: ABID97_RS24420 - translocation/assembly module TamB domain-containing protein, at 5,053,601 to 5,057,710
_RS24420
ABID97_RS24425: ABID97_RS24425 - hypothetical protein, at 5,057,785 to 5,058,087
_RS24425
ABID97_RS24430: ABID97_RS24430 - LysR family transcriptional regulator, at 5,058,115 to 5,058,969
_RS24430
ABID97_RS24435: ABID97_RS24435 - hypothetical protein, at 5,059,084 to 5,059,320
_RS24435
ABID97_RS24440: ABID97_RS24440 - oxalate/formate MFS antiporter, at 5,059,346 to 5,060,671
_RS24440
Position (kb) 5058
5059 Strain fitness (log2 ratio) -1
0
1 at 5057.579 kb on + strand at 5057.579 kb on + strand at 5057.624 kb on + strand at 5057.625 kb on - strand at 5057.625 kb on - strand at 5057.690 kb on + strand at 5057.690 kb on + strand at 5057.691 kb on - strand at 5057.836 kb on + strand, within ABID97_RS24425 at 5057.836 kb on + strand, within ABID97_RS24425 at 5057.935 kb on + strand, within ABID97_RS24425 at 5057.978 kb on - strand, within ABID97_RS24425 at 5058.020 kb on - strand, within ABID97_RS24425 at 5058.022 kb on + strand, within ABID97_RS24425 at 5058.023 kb on - strand, within ABID97_RS24425 at 5058.023 kb on - strand, within ABID97_RS24425 at 5058.023 kb on - strand, within ABID97_RS24425 at 5058.023 kb on - strand, within ABID97_RS24425 at 5058.197 kb on + strand at 5058.198 kb on - strand at 5058.206 kb on + strand, within ABID97_RS24430 at 5058.216 kb on - strand, within ABID97_RS24430 at 5058.294 kb on - strand, within ABID97_RS24430 at 5058.294 kb on - strand, within ABID97_RS24430 at 5058.321 kb on - strand, within ABID97_RS24430 at 5058.422 kb on + strand, within ABID97_RS24430 at 5058.422 kb on + strand, within ABID97_RS24430 at 5058.422 kb on + strand, within ABID97_RS24430 at 5058.422 kb on + strand, within ABID97_RS24430 at 5058.422 kb on + strand, within ABID97_RS24430 at 5058.422 kb on + strand, within ABID97_RS24430 at 5058.422 kb on + strand, within ABID97_RS24430 at 5058.428 kb on + strand, within ABID97_RS24430 at 5058.428 kb on + strand, within ABID97_RS24430 at 5058.428 kb on + strand, within ABID97_RS24430 at 5058.429 kb on - strand, within ABID97_RS24430 at 5058.429 kb on - strand, within ABID97_RS24430 at 5058.429 kb on - strand, within ABID97_RS24430 at 5058.534 kb on - strand, within ABID97_RS24430 at 5058.540 kb on + strand, within ABID97_RS24430 at 5058.993 kb on - strand at 5059.015 kb on + strand at 5059.015 kb on + strand at 5059.530 kb on + strand, within ABID97_RS24440 at 5059.531 kb on - strand, within ABID97_RS24440 at 5059.557 kb on + strand, within ABID97_RS24440 at 5059.602 kb on + strand, within ABID97_RS24440 at 5059.602 kb on + strand, within ABID97_RS24440 at 5059.603 kb on - strand, within ABID97_RS24440 at 5059.603 kb on - strand, within ABID97_RS24440 at 5059.674 kb on + strand, within ABID97_RS24440 at 5059.674 kb on + strand, within ABID97_RS24440 at 5059.675 kb on - strand, within ABID97_RS24440 at 5059.935 kb on + strand, within ABID97_RS24440 at 5059.935 kb on + strand, within ABID97_RS24440 at 5059.936 kb on - strand, within ABID97_RS24440 at 5059.936 kb on - strand, within ABID97_RS24440 at 5059.936 kb on - strand, within ABID97_RS24440
Per-strain Table
Position Strand Gene LocusTag Fraction L-Leucine (C) remove 5,057,579 + +1.7 5,057,579 + -0.8 5,057,624 + +1.0 5,057,625 - +0.1 5,057,625 - -0.3 5,057,690 + -0.5 5,057,690 + -0.3 5,057,691 - -0.1 5,057,836 + ABID97_RS24425 0.17 -0.1 5,057,836 + ABID97_RS24425 0.17 +1.1 5,057,935 + ABID97_RS24425 0.50 +1.1 5,057,978 - ABID97_RS24425 0.64 -0.2 5,058,020 - ABID97_RS24425 0.78 +1.7 5,058,022 + ABID97_RS24425 0.78 +0.4 5,058,023 - ABID97_RS24425 0.79 +0.5 5,058,023 - ABID97_RS24425 0.79 +0.4 5,058,023 - ABID97_RS24425 0.79 +1.3 5,058,023 - ABID97_RS24425 0.79 +0.3 5,058,197 + -0.4 5,058,198 - -0.6 5,058,206 + ABID97_RS24430 0.11 +0.6 5,058,216 - ABID97_RS24430 0.12 -0.3 5,058,294 - ABID97_RS24430 0.21 +0.1 5,058,294 - ABID97_RS24430 0.21 +0.0 5,058,321 - ABID97_RS24430 0.24 +0.3 5,058,422 + ABID97_RS24430 0.36 +0.4 5,058,422 + ABID97_RS24430 0.36 -0.0 5,058,422 + ABID97_RS24430 0.36 -1.6 5,058,422 + ABID97_RS24430 0.36 -0.2 5,058,422 + ABID97_RS24430 0.36 +0.2 5,058,422 + ABID97_RS24430 0.36 -0.1 5,058,422 + ABID97_RS24430 0.36 -0.8 5,058,428 + ABID97_RS24430 0.37 +0.2 5,058,428 + ABID97_RS24430 0.37 -0.1 5,058,428 + ABID97_RS24430 0.37 -0.2 5,058,429 - ABID97_RS24430 0.37 -0.0 5,058,429 - ABID97_RS24430 0.37 +0.4 5,058,429 - ABID97_RS24430 0.37 -0.2 5,058,534 - ABID97_RS24430 0.49 +0.1 5,058,540 + ABID97_RS24430 0.50 -0.1 5,058,993 - +0.1 5,059,015 + +0.1 5,059,015 + +0.3 5,059,530 + ABID97_RS24440 0.14 -0.7 5,059,531 - ABID97_RS24440 0.14 -0.3 5,059,557 + ABID97_RS24440 0.16 +0.3 5,059,602 + ABID97_RS24440 0.19 +0.1 5,059,602 + ABID97_RS24440 0.19 +0.1 5,059,603 - ABID97_RS24440 0.19 -0.0 5,059,603 - ABID97_RS24440 0.19 -0.3 5,059,674 + ABID97_RS24440 0.25 -0.4 5,059,674 + ABID97_RS24440 0.25 +0.2 5,059,675 - ABID97_RS24440 0.25 -0.5 5,059,935 + ABID97_RS24440 0.44 -0.0 5,059,935 + ABID97_RS24440 0.44 +0.3 5,059,936 - ABID97_RS24440 0.44 -0.1 5,059,936 - ABID97_RS24440 0.44 -0.2 5,059,936 - ABID97_RS24440 0.44 +0.1
Or see this region's nucleotide sequence