Strain Fitness in Variovorax sp. OAS795 around ABID97_RS23740

Experiment: L-Leucine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS23730 and ABID97_RS23735 overlap by 4 nucleotidesABID97_RS23735 and ABID97_RS23740 overlap by 4 nucleotidesABID97_RS23740 and ABID97_RS23745 are separated by 66 nucleotidesABID97_RS23745 and ABID97_RS23750 are separated by 171 nucleotides ABID97_RS23730: ABID97_RS23730 - tetratricopeptide repeat protein, at 4,913,983 to 4,915,839 _RS23730 ABID97_RS23735: ABID97_RS23735 - lipoprotein insertase outer membrane protein LolB, at 4,915,836 to 4,916,360 _RS23735 ABID97_RS23740: ABID97_RS23740 - 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase, at 4,916,357 to 4,917,247 _RS23740 ABID97_RS23745: ABID97_RS23745 - tRNA-Gln, at 4,917,314 to 4,917,390 _RS23745 ABID97_RS23750: ABID97_RS23750 - ribose-phosphate pyrophosphokinase, at 4,917,562 to 4,918,533 _RS23750 Position (kb) 4916 4917 4918Strain fitness (log2 ratio) -1 0 1at 4915.498 kb on + strand, within ABID97_RS23730at 4915.498 kb on + strand, within ABID97_RS23730at 4915.499 kb on - strand, within ABID97_RS23730at 4915.499 kb on - strand, within ABID97_RS23730at 4915.675 kb on + strandat 4915.676 kb on - strandat 4915.676 kb on - strandat 4917.281 kb on + strandat 4917.281 kb on + strandat 4917.400 kb on + strandat 4917.400 kb on + strandat 4917.481 kb on + strandat 4917.530 kb on + strandat 4917.530 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
remove
4,915,498 + ABID97_RS23730 0.82 -0.1
4,915,498 + ABID97_RS23730 0.82 +0.5
4,915,499 - ABID97_RS23730 0.82 -0.1
4,915,499 - ABID97_RS23730 0.82 -0.2
4,915,675 + +0.1
4,915,676 - -0.0
4,915,676 - -0.0
4,917,281 + +1.1
4,917,281 + -0.6
4,917,400 + -0.5
4,917,400 + -0.4
4,917,481 + -0.9
4,917,530 + -0.4
4,917,530 + +1.2

Or see this region's nucleotide sequence