Strain Fitness in Variovorax sp. OAS795 around ABID97_RS23425

Experiment: L-Leucine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS23420 and ABID97_RS23425 are separated by 50 nucleotidesABID97_RS23425 and ABID97_RS23430 are separated by 116 nucleotides ABID97_RS23420: ABID97_RS23420 - polyprenyl synthetase family protein, at 4,843,729 to 4,844,721 _RS23420 ABID97_RS23425: ABID97_RS23425 - tRNA-Pro, at 4,844,772 to 4,844,848 _RS23425 ABID97_RS23430: ABID97_RS23430 - type IV-A pilus assembly ATPase PilB, at 4,844,965 to 4,846,701 _RS23430 Position (kb) 4844 4845Strain fitness (log2 ratio) -2 -1 0 1at 4844.779 kb on + strandat 4844.779 kb on + strandat 4844.779 kb on + strandat 4844.784 kb on + strand, within ABID97_RS23425at 4844.800 kb on + strand, within ABID97_RS23425at 4844.801 kb on - strand, within ABID97_RS23425at 4844.814 kb on - strand, within ABID97_RS23425at 4844.869 kb on + strandat 4844.869 kb on + strandat 4844.900 kb on + strandat 4844.900 kb on + strandat 4844.900 kb on + strandat 4844.901 kb on - strandat 4844.997 kb on + strandat 4844.997 kb on + strandat 4844.998 kb on - strandat 4845.076 kb on + strandat 4845.076 kb on + strandat 4845.076 kb on + strandat 4845.077 kb on - strandat 4845.077 kb on - strandat 4845.077 kb on - strandat 4845.077 kb on - strandat 4845.389 kb on - strand, within ABID97_RS23430at 4845.496 kb on - strand, within ABID97_RS23430at 4845.496 kb on - strand, within ABID97_RS23430at 4845.496 kb on - strand, within ABID97_RS23430at 4845.631 kb on + strand, within ABID97_RS23430at 4845.631 kb on + strand, within ABID97_RS23430

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
remove
4,844,779 + -2.3
4,844,779 + -1.0
4,844,779 + -2.0
4,844,784 + ABID97_RS23425 0.16 -0.2
4,844,800 + ABID97_RS23425 0.36 -2.0
4,844,801 - ABID97_RS23425 0.38 -1.8
4,844,814 - ABID97_RS23425 0.55 -0.7
4,844,869 + -0.8
4,844,869 + -1.1
4,844,900 + -0.4
4,844,900 + -0.8
4,844,900 + -0.6
4,844,901 - -1.4
4,844,997 + +0.0
4,844,997 + -2.4
4,844,998 - -1.2
4,845,076 + -1.2
4,845,076 + -2.3
4,845,076 + -1.6
4,845,077 - -1.5
4,845,077 - -1.4
4,845,077 - -2.0
4,845,077 - -1.6
4,845,389 - ABID97_RS23430 0.24 -1.0
4,845,496 - ABID97_RS23430 0.31 -2.1
4,845,496 - ABID97_RS23430 0.31 -0.5
4,845,496 - ABID97_RS23430 0.31 -1.8
4,845,631 + ABID97_RS23430 0.38 -1.2
4,845,631 + ABID97_RS23430 0.38 -0.6

Or see this region's nucleotide sequence