Strain Fitness in Variovorax sp. OAS795 around ABID97_RS22110

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS22105 and ABID97_RS22110 are separated by 98 nucleotidesABID97_RS22110 and ABID97_RS22115 are separated by 78 nucleotides ABID97_RS22105: ABID97_RS22105 - ABC transporter ATP-binding protein, at 4,574,244 to 4,575,782 _RS22105 ABID97_RS22110: ABID97_RS22110 - NCS2 family permease, at 4,575,881 to 4,577,287 _RS22110 ABID97_RS22115: ABID97_RS22115 - LysR family transcriptional regulator, at 4,577,366 to 4,578,364 _RS22115 Position (kb) 4575 4576 4577 4578Strain fitness (log2 ratio) -2 -1 0 1 2at 4574.891 kb on - strand, within ABID97_RS22105at 4575.208 kb on + strand, within ABID97_RS22105at 4575.209 kb on - strand, within ABID97_RS22105at 4575.409 kb on + strand, within ABID97_RS22105at 4575.629 kb on - strandat 4575.893 kb on + strandat 4575.894 kb on - strandat 4575.894 kb on - strandat 4575.897 kb on + strandat 4575.897 kb on + strandat 4575.898 kb on - strandat 4575.988 kb on - strandat 4576.026 kb on + strand, within ABID97_RS22110at 4576.273 kb on - strand, within ABID97_RS22110at 4576.481 kb on + strand, within ABID97_RS22110at 4576.482 kb on - strand, within ABID97_RS22110at 4576.482 kb on - strand, within ABID97_RS22110at 4576.482 kb on - strand, within ABID97_RS22110at 4576.917 kb on + strand, within ABID97_RS22110at 4576.918 kb on - strand, within ABID97_RS22110at 4576.927 kb on - strand, within ABID97_RS22110at 4577.085 kb on + strand, within ABID97_RS22110at 4577.086 kb on - strand, within ABID97_RS22110at 4577.309 kb on + strandat 4577.309 kb on + strandat 4577.310 kb on - strandat 4577.526 kb on + strand, within ABID97_RS22115at 4577.527 kb on - strand, within ABID97_RS22115at 4577.529 kb on + strand, within ABID97_RS22115at 4577.529 kb on + strand, within ABID97_RS22115at 4577.529 kb on + strand, within ABID97_RS22115at 4577.530 kb on - strand, within ABID97_RS22115at 4577.530 kb on - strand, within ABID97_RS22115at 4577.937 kb on + strand, within ABID97_RS22115at 4578.255 kb on + strand, within ABID97_RS22115at 4578.255 kb on + strand, within ABID97_RS22115at 4578.255 kb on + strand, within ABID97_RS22115at 4578.256 kb on - strand, within ABID97_RS22115

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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4,574,891 - ABID97_RS22105 0.42 +1.6
4,575,208 + ABID97_RS22105 0.63 +1.8
4,575,209 - ABID97_RS22105 0.63 +0.9
4,575,409 + ABID97_RS22105 0.76 +0.7
4,575,629 - +0.3
4,575,893 + -1.1
4,575,894 - -2.1
4,575,894 - -2.5
4,575,897 + -1.4
4,575,897 + -0.7
4,575,898 - -2.2
4,575,988 - -1.0
4,576,026 + ABID97_RS22110 0.10 +0.3
4,576,273 - ABID97_RS22110 0.28 -1.8
4,576,481 + ABID97_RS22110 0.43 -1.4
4,576,482 - ABID97_RS22110 0.43 -0.7
4,576,482 - ABID97_RS22110 0.43 -1.3
4,576,482 - ABID97_RS22110 0.43 -0.4
4,576,917 + ABID97_RS22110 0.74 +0.8
4,576,918 - ABID97_RS22110 0.74 -0.8
4,576,927 - ABID97_RS22110 0.74 -2.0
4,577,085 + ABID97_RS22110 0.86 -0.9
4,577,086 - ABID97_RS22110 0.86 -1.2
4,577,309 + -1.0
4,577,309 + -1.2
4,577,310 - -1.7
4,577,526 + ABID97_RS22115 0.16 -0.8
4,577,527 - ABID97_RS22115 0.16 -1.0
4,577,529 + ABID97_RS22115 0.16 +1.0
4,577,529 + ABID97_RS22115 0.16 -2.2
4,577,529 + ABID97_RS22115 0.16 -2.2
4,577,530 - ABID97_RS22115 0.16 -1.3
4,577,530 - ABID97_RS22115 0.16 +0.4
4,577,937 + ABID97_RS22115 0.57 -0.6
4,578,255 + ABID97_RS22115 0.89 +2.0
4,578,255 + ABID97_RS22115 0.89 -0.5
4,578,255 + ABID97_RS22115 0.89 +1.1
4,578,256 - ABID97_RS22115 0.89 -0.2

Or see this region's nucleotide sequence