Experiment: L-Leucine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS19400 and ABID97_RS19405 are separated by 17 nucleotides ABID97_RS19405 and ABID97_RS19410 are separated by 32 nucleotides ABID97_RS19410 and ABID97_RS19415 are separated by 28 nucleotides
ABID97_RS19400: ABID97_RS19400 - LysR family transcriptional regulator, at 4,006,340 to 4,007,266
_RS19400
ABID97_RS19405: ABID97_RS19405 - 3-hydroxyisobutyrate dehydrogenase, at 4,007,284 to 4,008,177
_RS19405
ABID97_RS19410: ABID97_RS19410 - enoyl-CoA hydratase/isomerase family protein, at 4,008,210 to 4,009,325
_RS19410
ABID97_RS19415: ABID97_RS19415 - acyl-CoA dehydrogenase family protein, at 4,009,354 to 4,010,508
_RS19415
Position (kb) 4008
4009
4010 Strain fitness (log2 ratio) -2
-1
0
1 at 4007.468 kb on + strand, within ABID97_RS19405 at 4007.469 kb on - strand, within ABID97_RS19405 at 4007.469 kb on - strand, within ABID97_RS19405 at 4008.108 kb on - strand at 4008.108 kb on - strand at 4008.596 kb on - strand, within ABID97_RS19410 at 4008.872 kb on - strand, within ABID97_RS19410 at 4009.311 kb on + strand at 4009.484 kb on + strand, within ABID97_RS19415 at 4009.485 kb on - strand, within ABID97_RS19415 at 4009.568 kb on + strand, within ABID97_RS19415 at 4009.568 kb on + strand, within ABID97_RS19415 at 4009.568 kb on + strand, within ABID97_RS19415 at 4009.568 kb on + strand, within ABID97_RS19415 at 4009.569 kb on - strand, within ABID97_RS19415 at 4010.070 kb on - strand, within ABID97_RS19415 at 4010.144 kb on + strand, within ABID97_RS19415 at 4010.145 kb on - strand, within ABID97_RS19415
Per-strain Table
Position Strand Gene LocusTag Fraction L-Leucine (C) remove 4,007,468 + ABID97_RS19405 0.21 -1.2 4,007,469 - ABID97_RS19405 0.21 -0.7 4,007,469 - ABID97_RS19405 0.21 -1.2 4,008,108 - -0.5 4,008,108 - -0.8 4,008,596 - ABID97_RS19410 0.35 -0.8 4,008,872 - ABID97_RS19410 0.59 -2.0 4,009,311 + -0.0 4,009,484 + ABID97_RS19415 0.11 -0.4 4,009,485 - ABID97_RS19415 0.11 -1.0 4,009,568 + ABID97_RS19415 0.19 -0.3 4,009,568 + ABID97_RS19415 0.19 -0.6 4,009,568 + ABID97_RS19415 0.19 -0.8 4,009,568 + ABID97_RS19415 0.19 -1.0 4,009,569 - ABID97_RS19415 0.19 -0.5 4,010,070 - ABID97_RS19415 0.62 +0.2 4,010,144 + ABID97_RS19415 0.68 -0.3 4,010,145 - ABID97_RS19415 0.68 -0.7
Or see this region's nucleotide sequence