Strain Fitness in Variovorax sp. OAS795 around ABID97_RS19385

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS19380 and ABID97_RS19385 are separated by 179 nucleotidesABID97_RS19385 and ABID97_RS19390 overlap by 59 nucleotidesABID97_RS19390 and ABID97_RS19395 are separated by 48 nucleotides ABID97_RS19380: ABID97_RS19380 - 2-methylcitrate synthase, at 4,000,182 to 4,001,348 _RS19380 ABID97_RS19385: ABID97_RS19385 - short-chain fatty acyl-CoA regulator family protein, at 4,001,528 to 4,003,039 _RS19385 ABID97_RS19390: ABID97_RS19390 - hypothetical protein, at 4,002,981 to 4,003,844 _RS19390 ABID97_RS19395: ABID97_RS19395 - 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase, at 4,003,893 to 4,006,238 _RS19395 Position (kb) 4001 4002 4003 4004Strain fitness (log2 ratio) -2 -1 0 1at 4000.693 kb on + strand, within ABID97_RS19380at 4000.901 kb on - strand, within ABID97_RS19380at 4001.116 kb on + strand, within ABID97_RS19380at 4001.116 kb on + strand, within ABID97_RS19380at 4001.627 kb on + strandat 4002.054 kb on + strand, within ABID97_RS19385at 4002.055 kb on - strand, within ABID97_RS19385at 4002.404 kb on + strand, within ABID97_RS19385at 4002.438 kb on + strand, within ABID97_RS19385at 4002.675 kb on - strand, within ABID97_RS19385at 4003.463 kb on - strand, within ABID97_RS19390at 4003.693 kb on + strand, within ABID97_RS19390at 4003.694 kb on - strand, within ABID97_RS19390

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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4,000,693 + ABID97_RS19380 0.44 -0.5
4,000,901 - ABID97_RS19380 0.62 -1.9
4,001,116 + ABID97_RS19380 0.80 +1.6
4,001,116 + ABID97_RS19380 0.80 -0.4
4,001,627 + -1.1
4,002,054 + ABID97_RS19385 0.35 -0.7
4,002,055 - ABID97_RS19385 0.35 +0.2
4,002,404 + ABID97_RS19385 0.58 +0.2
4,002,438 + ABID97_RS19385 0.60 -0.9
4,002,675 - ABID97_RS19385 0.76 +0.3
4,003,463 - ABID97_RS19390 0.56 -0.5
4,003,693 + ABID97_RS19390 0.82 +0.1
4,003,694 - ABID97_RS19390 0.83 -0.5

Or see this region's nucleotide sequence