Strain Fitness in Variovorax sp. OAS795 around ABID97_RS18845

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS18840 and ABID97_RS18845 are separated by 157 nucleotidesABID97_RS18845 and ABID97_RS18850 overlap by 13 nucleotidesABID97_RS18850 and ABID97_RS18855 overlap by 65 nucleotides ABID97_RS18840: ABID97_RS18840 - zinc-binding dehydrogenase, at 3,880,265 to 3,881,275 _RS18840 ABID97_RS18845: ABID97_RS18845 - GMC family oxidoreductase N-terminal domain-containing protein, at 3,881,433 to 3,882,581 _RS18845 ABID97_RS18850: ABID97_RS18850 - GMC oxidoreductase, at 3,882,569 to 3,883,045 _RS18850 ABID97_RS18855: ABID97_RS18855 - GMC family oxidoreductase N-terminal domain-containing protein, at 3,882,981 to 3,884,633 _RS18855 Position (kb) 3881 3882 3883Strain fitness (log2 ratio) -1 0 1 2at 3880.568 kb on + strand, within ABID97_RS18840at 3880.569 kb on - strand, within ABID97_RS18840at 3880.820 kb on + strand, within ABID97_RS18840at 3881.473 kb on - strandat 3881.661 kb on + strand, within ABID97_RS18845at 3881.760 kb on + strand, within ABID97_RS18845at 3881.761 kb on - strand, within ABID97_RS18845at 3881.896 kb on + strand, within ABID97_RS18845at 3881.896 kb on + strand, within ABID97_RS18845at 3881.897 kb on - strand, within ABID97_RS18845at 3881.897 kb on - strand, within ABID97_RS18845at 3881.994 kb on + strand, within ABID97_RS18845at 3882.072 kb on + strand, within ABID97_RS18845at 3882.072 kb on + strand, within ABID97_RS18845at 3882.160 kb on + strand, within ABID97_RS18845at 3882.161 kb on - strand, within ABID97_RS18845at 3882.164 kb on + strand, within ABID97_RS18845at 3882.583 kb on - strandat 3882.612 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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3,880,568 + ABID97_RS18840 0.30 -0.2
3,880,569 - ABID97_RS18840 0.30 +2.4
3,880,820 + ABID97_RS18840 0.55 +0.7
3,881,473 - +0.1
3,881,661 + ABID97_RS18845 0.20 +0.0
3,881,760 + ABID97_RS18845 0.28 -0.1
3,881,761 - ABID97_RS18845 0.29 -0.1
3,881,896 + ABID97_RS18845 0.40 +0.3
3,881,896 + ABID97_RS18845 0.40 -0.6
3,881,897 - ABID97_RS18845 0.40 -0.2
3,881,897 - ABID97_RS18845 0.40 -0.3
3,881,994 + ABID97_RS18845 0.49 +0.1
3,882,072 + ABID97_RS18845 0.56 +0.8
3,882,072 + ABID97_RS18845 0.56 -0.3
3,882,160 + ABID97_RS18845 0.63 +0.1
3,882,161 - ABID97_RS18845 0.63 -0.5
3,882,164 + ABID97_RS18845 0.64 -0.6
3,882,583 - +1.6
3,882,612 - +0.0

Or see this region's nucleotide sequence