Strain Fitness in Variovorax sp. OAS795 around ABID97_RS18125

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS18115 and ABID97_RS18120 are separated by 59 nucleotidesABID97_RS18120 and ABID97_RS18125 are separated by 36 nucleotidesABID97_RS18125 and ABID97_RS18130 overlap by 89 nucleotidesABID97_RS18130 and ABID97_RS18135 overlap by 1 nucleotides ABID97_RS18115: ABID97_RS18115 - substrate-binding domain-containing protein, at 3,740,838 to 3,741,656 _RS18115 ABID97_RS18120: ABID97_RS18120 - transporter substrate-binding domain-containing protein, at 3,741,716 to 3,742,471 _RS18120 ABID97_RS18125: ABID97_RS18125 - D-amino acid dehydrogenase, at 3,742,508 to 3,743,914 _RS18125 ABID97_RS18130: ABID97_RS18130 - 2-dehydropantoate 2-reductase, at 3,743,826 to 3,744,857 _RS18130 ABID97_RS18135: ABID97_RS18135 - alanine--tRNA ligase, at 3,744,857 to 3,747,481 _RS18135 Position (kb) 3742 3743 3744Strain fitness (log2 ratio) -1 0 1at 3741.589 kb on - strandat 3741.744 kb on + strandat 3741.744 kb on + strandat 3741.745 kb on - strandat 3741.745 kb on - strandat 3742.028 kb on + strand, within ABID97_RS18120at 3742.028 kb on + strand, within ABID97_RS18120at 3742.029 kb on - strand, within ABID97_RS18120at 3742.049 kb on + strand, within ABID97_RS18120at 3742.050 kb on - strand, within ABID97_RS18120at 3742.050 kb on - strand, within ABID97_RS18120at 3742.050 kb on - strand, within ABID97_RS18120at 3742.050 kb on - strand, within ABID97_RS18120at 3742.137 kb on - strand, within ABID97_RS18120at 3742.469 kb on + strandat 3742.873 kb on - strand, within ABID97_RS18125at 3742.873 kb on - strand, within ABID97_RS18125at 3742.873 kb on - strand, within ABID97_RS18125at 3742.873 kb on - strand, within ABID97_RS18125at 3742.873 kb on - strand, within ABID97_RS18125at 3742.954 kb on - strand, within ABID97_RS18125at 3742.999 kb on - strand, within ABID97_RS18125at 3743.019 kb on + strand, within ABID97_RS18125at 3743.020 kb on - strand, within ABID97_RS18125at 3743.376 kb on + strand, within ABID97_RS18125at 3743.463 kb on + strand, within ABID97_RS18125at 3743.713 kb on - strand, within ABID97_RS18125at 3743.715 kb on + strand, within ABID97_RS18125at 3743.716 kb on - strand, within ABID97_RS18125at 3743.810 kb on + strandat 3743.828 kb on - strandat 3743.828 kb on - strandat 3744.437 kb on - strand, within ABID97_RS18130at 3744.437 kb on - strand, within ABID97_RS18130at 3744.785 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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3,741,589 - +0.2
3,741,744 + -1.1
3,741,744 + +0.1
3,741,745 - -0.1
3,741,745 - +0.2
3,742,028 + ABID97_RS18120 0.41 -0.2
3,742,028 + ABID97_RS18120 0.41 -0.5
3,742,029 - ABID97_RS18120 0.41 -0.8
3,742,049 + ABID97_RS18120 0.44 +0.1
3,742,050 - ABID97_RS18120 0.44 -0.1
3,742,050 - ABID97_RS18120 0.44 +0.0
3,742,050 - ABID97_RS18120 0.44 +0.3
3,742,050 - ABID97_RS18120 0.44 -0.3
3,742,137 - ABID97_RS18120 0.56 +1.6
3,742,469 + -0.0
3,742,873 - ABID97_RS18125 0.26 -0.2
3,742,873 - ABID97_RS18125 0.26 -0.2
3,742,873 - ABID97_RS18125 0.26 +0.6
3,742,873 - ABID97_RS18125 0.26 +0.1
3,742,873 - ABID97_RS18125 0.26 -0.3
3,742,954 - ABID97_RS18125 0.32 +0.3
3,742,999 - ABID97_RS18125 0.35 +0.1
3,743,019 + ABID97_RS18125 0.36 -0.4
3,743,020 - ABID97_RS18125 0.36 +0.0
3,743,376 + ABID97_RS18125 0.62 -0.4
3,743,463 + ABID97_RS18125 0.68 -0.4
3,743,713 - ABID97_RS18125 0.86 -0.4
3,743,715 + ABID97_RS18125 0.86 -0.4
3,743,716 - ABID97_RS18125 0.86 +0.2
3,743,810 + -0.3
3,743,828 - -0.9
3,743,828 - -0.0
3,744,437 - ABID97_RS18130 0.59 +0.0
3,744,437 - ABID97_RS18130 0.59 -0.1
3,744,785 - -0.1

Or see this region's nucleotide sequence