Strain Fitness in Variovorax sp. OAS795 around ABID97_RS17190

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS17180 and ABID97_RS17185 overlap by 11 nucleotidesABID97_RS17185 and ABID97_RS17190 are separated by 30 nucleotidesABID97_RS17190 and ABID97_RS17195 are separated by 11 nucleotidesABID97_RS17195 and ABID97_RS17200 are separated by 61 nucleotides ABID97_RS17180: ABID97_RS17180 - D-amino acid dehydrogenase, at 3,550,370 to 3,551,623 _RS17180 ABID97_RS17185: ABID97_RS17185 - hypothetical protein, at 3,551,613 to 3,552,041 _RS17185 ABID97_RS17190: ABID97_RS17190 - NAD(P)H-hydrate dehydratase, at 3,552,072 to 3,553,526 _RS17190 ABID97_RS17195: ABID97_RS17195 - SDR family oxidoreductase, at 3,553,538 to 3,554,302 _RS17195 ABID97_RS17200: ABID97_RS17200 - ribonuclease R, at 3,554,364 to 3,556,631 _RS17200 Position (kb) 3552 3553 3554Strain fitness (log2 ratio) -1 0 1at 3551.183 kb on + strand, within ABID97_RS17180at 3551.255 kb on + strand, within ABID97_RS17180at 3551.255 kb on + strand, within ABID97_RS17180at 3551.256 kb on - strand, within ABID97_RS17180at 3551.256 kb on - strand, within ABID97_RS17180at 3551.256 kb on - strand, within ABID97_RS17180at 3551.360 kb on + strand, within ABID97_RS17180at 3551.360 kb on + strand, within ABID97_RS17180at 3551.360 kb on + strand, within ABID97_RS17180at 3551.621 kb on + strandat 3552.052 kb on + strandat 3552.053 kb on - strandat 3552.426 kb on + strand, within ABID97_RS17190at 3552.759 kb on - strand, within ABID97_RS17190at 3552.759 kb on - strand, within ABID97_RS17190at 3552.793 kb on - strand, within ABID97_RS17190at 3552.793 kb on - strand, within ABID97_RS17190at 3552.793 kb on - strand, within ABID97_RS17190at 3552.793 kb on - strand, within ABID97_RS17190at 3553.108 kb on + strand, within ABID97_RS17190at 3553.579 kb on + strandat 3553.620 kb on + strand, within ABID97_RS17195at 3553.620 kb on + strand, within ABID97_RS17195at 3553.620 kb on + strand, within ABID97_RS17195at 3553.620 kb on + strand, within ABID97_RS17195at 3553.620 kb on + strand, within ABID97_RS17195at 3553.620 kb on + strand, within ABID97_RS17195at 3553.620 kb on + strand, within ABID97_RS17195at 3553.620 kb on + strand, within ABID97_RS17195at 3553.620 kb on + strand, within ABID97_RS17195at 3553.621 kb on - strand, within ABID97_RS17195at 3553.621 kb on - strand, within ABID97_RS17195at 3553.621 kb on - strand, within ABID97_RS17195at 3553.621 kb on - strand, within ABID97_RS17195at 3553.621 kb on - strand, within ABID97_RS17195at 3553.621 kb on - strand, within ABID97_RS17195at 3553.764 kb on + strand, within ABID97_RS17195at 3553.765 kb on - strand, within ABID97_RS17195at 3553.765 kb on - strand, within ABID97_RS17195at 3553.765 kb on - strand, within ABID97_RS17195at 3553.765 kb on - strand, within ABID97_RS17195

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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3,551,183 + ABID97_RS17180 0.65 -0.2
3,551,255 + ABID97_RS17180 0.71 +0.5
3,551,255 + ABID97_RS17180 0.71 +0.2
3,551,256 - ABID97_RS17180 0.71 -0.6
3,551,256 - ABID97_RS17180 0.71 +0.1
3,551,256 - ABID97_RS17180 0.71 -0.4
3,551,360 + ABID97_RS17180 0.79 +0.8
3,551,360 + ABID97_RS17180 0.79 -0.1
3,551,360 + ABID97_RS17180 0.79 -0.1
3,551,621 + -0.7
3,552,052 + +0.3
3,552,053 - +0.2
3,552,426 + ABID97_RS17190 0.24 +0.4
3,552,759 - ABID97_RS17190 0.47 -0.1
3,552,759 - ABID97_RS17190 0.47 +1.0
3,552,793 - ABID97_RS17190 0.50 -0.7
3,552,793 - ABID97_RS17190 0.50 +0.1
3,552,793 - ABID97_RS17190 0.50 +0.1
3,552,793 - ABID97_RS17190 0.50 +0.4
3,553,108 + ABID97_RS17190 0.71 +0.7
3,553,579 + -0.6
3,553,620 + ABID97_RS17195 0.11 -0.6
3,553,620 + ABID97_RS17195 0.11 -1.4
3,553,620 + ABID97_RS17195 0.11 +1.2
3,553,620 + ABID97_RS17195 0.11 -0.1
3,553,620 + ABID97_RS17195 0.11 -0.5
3,553,620 + ABID97_RS17195 0.11 -0.7
3,553,620 + ABID97_RS17195 0.11 +0.4
3,553,620 + ABID97_RS17195 0.11 -0.6
3,553,620 + ABID97_RS17195 0.11 -0.4
3,553,621 - ABID97_RS17195 0.11 -0.8
3,553,621 - ABID97_RS17195 0.11 -0.5
3,553,621 - ABID97_RS17195 0.11 -1.2
3,553,621 - ABID97_RS17195 0.11 -0.4
3,553,621 - ABID97_RS17195 0.11 -0.1
3,553,621 - ABID97_RS17195 0.11 -0.8
3,553,764 + ABID97_RS17195 0.30 -0.4
3,553,765 - ABID97_RS17195 0.30 +0.0
3,553,765 - ABID97_RS17195 0.30 -0.4
3,553,765 - ABID97_RS17195 0.30 -0.6
3,553,765 - ABID97_RS17195 0.30 +0.1

Or see this region's nucleotide sequence