Strain Fitness in Variovorax sp. OAS795 around ABID97_RS16705

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS16700 and ABID97_RS16705 are separated by 9 nucleotidesABID97_RS16705 and ABID97_RS16710 are separated by 14 nucleotidesABID97_RS16710 and ABID97_RS16715 overlap by 4 nucleotides ABID97_RS16700: ABID97_RS16700 - lipid A export permease/ATP-binding protein MsbA, at 3,455,748 to 3,457,532 _RS16700 ABID97_RS16705: ABID97_RS16705 - ribonuclease G, at 3,457,542 to 3,459,068 _RS16705 ABID97_RS16710: ABID97_RS16710 - Maf family nucleotide pyrophosphatase, at 3,459,083 to 3,459,691 _RS16710 ABID97_RS16715: ABID97_RS16715 - 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH, at 3,459,688 to 3,460,155 _RS16715 Position (kb) 3457 3458 3459 3460Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3457.561 kb on + strandat 3457.728 kb on + strand, within ABID97_RS16705at 3457.747 kb on + strand, within ABID97_RS16705at 3458.141 kb on - strand, within ABID97_RS16705at 3458.203 kb on + strand, within ABID97_RS16705at 3458.203 kb on + strand, within ABID97_RS16705at 3458.204 kb on - strand, within ABID97_RS16705at 3458.233 kb on + strand, within ABID97_RS16705at 3458.233 kb on + strand, within ABID97_RS16705at 3458.234 kb on - strand, within ABID97_RS16705at 3458.234 kb on - strand, within ABID97_RS16705at 3458.234 kb on - strand, within ABID97_RS16705at 3458.234 kb on - strand, within ABID97_RS16705at 3458.266 kb on + strand, within ABID97_RS16705at 3458.266 kb on + strand, within ABID97_RS16705at 3458.266 kb on + strand, within ABID97_RS16705at 3458.266 kb on + strand, within ABID97_RS16705at 3458.266 kb on + strand, within ABID97_RS16705at 3458.266 kb on + strand, within ABID97_RS16705at 3458.267 kb on - strand, within ABID97_RS16705at 3458.267 kb on - strand, within ABID97_RS16705at 3458.267 kb on - strand, within ABID97_RS16705at 3458.267 kb on - strand, within ABID97_RS16705at 3458.267 kb on - strand, within ABID97_RS16705at 3458.267 kb on - strand, within ABID97_RS16705at 3458.267 kb on - strand, within ABID97_RS16705at 3458.449 kb on + strand, within ABID97_RS16705at 3458.449 kb on + strand, within ABID97_RS16705at 3458.450 kb on - strand, within ABID97_RS16705at 3458.450 kb on - strand, within ABID97_RS16705at 3458.947 kb on + strandat 3458.947 kb on + strandat 3458.947 kb on + strandat 3458.948 kb on - strandat 3458.948 kb on - strandat 3458.948 kb on - strandat 3458.948 kb on - strandat 3458.948 kb on - strandat 3458.948 kb on - strandat 3459.070 kb on + strandat 3459.089 kb on - strandat 3459.154 kb on - strand, within ABID97_RS16710at 3459.204 kb on + strand, within ABID97_RS16710at 3459.243 kb on + strand, within ABID97_RS16710at 3459.244 kb on - strand, within ABID97_RS16710at 3459.534 kb on + strand, within ABID97_RS16710at 3459.535 kb on - strand, within ABID97_RS16710at 3459.669 kb on + strandat 3459.669 kb on + strandat 3459.669 kb on + strandat 3459.669 kb on + strandat 3459.669 kb on + strandat 3459.735 kb on - strand, within ABID97_RS16715at 3460.001 kb on + strand, within ABID97_RS16715at 3460.001 kb on + strand, within ABID97_RS16715at 3460.002 kb on - strand, within ABID97_RS16715

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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3,457,561 + -3.5
3,457,728 + ABID97_RS16705 0.12 -1.4
3,457,747 + ABID97_RS16705 0.13 -3.0
3,458,141 - ABID97_RS16705 0.39 -3.6
3,458,203 + ABID97_RS16705 0.43 -1.8
3,458,203 + ABID97_RS16705 0.43 -2.3
3,458,204 - ABID97_RS16705 0.43 -1.3
3,458,233 + ABID97_RS16705 0.45 -3.8
3,458,233 + ABID97_RS16705 0.45 -2.2
3,458,234 - ABID97_RS16705 0.45 -3.4
3,458,234 - ABID97_RS16705 0.45 -1.9
3,458,234 - ABID97_RS16705 0.45 -1.0
3,458,234 - ABID97_RS16705 0.45 -4.3
3,458,266 + ABID97_RS16705 0.47 -2.6
3,458,266 + ABID97_RS16705 0.47 -2.3
3,458,266 + ABID97_RS16705 0.47 -3.3
3,458,266 + ABID97_RS16705 0.47 -2.1
3,458,266 + ABID97_RS16705 0.47 -2.3
3,458,266 + ABID97_RS16705 0.47 -3.4
3,458,267 - ABID97_RS16705 0.47 -3.9
3,458,267 - ABID97_RS16705 0.47 -1.3
3,458,267 - ABID97_RS16705 0.47 -4.6
3,458,267 - ABID97_RS16705 0.47 -2.2
3,458,267 - ABID97_RS16705 0.47 -2.0
3,458,267 - ABID97_RS16705 0.47 -2.6
3,458,267 - ABID97_RS16705 0.47 -2.5
3,458,449 + ABID97_RS16705 0.59 -2.9
3,458,449 + ABID97_RS16705 0.59 -3.0
3,458,450 - ABID97_RS16705 0.59 -2.5
3,458,450 - ABID97_RS16705 0.59 -2.1
3,458,947 + -1.2
3,458,947 + -3.3
3,458,947 + -1.3
3,458,948 - -2.0
3,458,948 - -1.8
3,458,948 - -3.1
3,458,948 - -2.7
3,458,948 - -3.5
3,458,948 - -1.7
3,459,070 + +0.8
3,459,089 - -0.5
3,459,154 - ABID97_RS16710 0.12 -0.0
3,459,204 + ABID97_RS16710 0.20 -0.3
3,459,243 + ABID97_RS16710 0.26 +1.1
3,459,244 - ABID97_RS16710 0.26 -0.3
3,459,534 + ABID97_RS16710 0.74 +0.1
3,459,535 - ABID97_RS16710 0.74 -0.9
3,459,669 + +0.4
3,459,669 + +0.3
3,459,669 + +0.0
3,459,669 + -0.2
3,459,669 + -0.3
3,459,735 - ABID97_RS16715 0.10 -0.2
3,460,001 + ABID97_RS16715 0.67 +0.5
3,460,001 + ABID97_RS16715 0.67 +0.4
3,460,002 - ABID97_RS16715 0.67 +2.0

Or see this region's nucleotide sequence