Strain Fitness in Variovorax sp. OAS795 around ABID97_RS15705

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS15700 and ABID97_RS15705 are separated by 168 nucleotidesABID97_RS15705 and ABID97_RS15710 are separated by 122 nucleotides ABID97_RS15700: ABID97_RS15700 - protein adenylyltransferase SelO, at 3,249,210 to 3,250,691 _RS15700 ABID97_RS15705: ABID97_RS15705 - 3-(methylthio)propionyl-CoA ligase, at 3,250,860 to 3,252,503 _RS15705 ABID97_RS15710: ABID97_RS15710 - branched-chain amino acid ABC transporter substrate-binding protein, at 3,252,626 to 3,253,855 _RS15710 Position (kb) 3250 3251 3252 3253Strain fitness (log2 ratio) -2 -1 0 1 2at 3249.880 kb on + strand, within ABID97_RS15700at 3250.066 kb on + strand, within ABID97_RS15700at 3250.066 kb on + strand, within ABID97_RS15700at 3250.067 kb on - strand, within ABID97_RS15700at 3250.067 kb on - strand, within ABID97_RS15700at 3250.321 kb on + strand, within ABID97_RS15700at 3250.321 kb on + strand, within ABID97_RS15700at 3250.322 kb on - strand, within ABID97_RS15700at 3250.438 kb on + strand, within ABID97_RS15700at 3250.439 kb on - strand, within ABID97_RS15700at 3250.827 kb on - strandat 3251.100 kb on + strand, within ABID97_RS15705at 3251.100 kb on + strand, within ABID97_RS15705at 3251.100 kb on + strand, within ABID97_RS15705at 3251.101 kb on - strand, within ABID97_RS15705at 3251.103 kb on + strand, within ABID97_RS15705at 3251.103 kb on + strand, within ABID97_RS15705at 3251.103 kb on + strand, within ABID97_RS15705at 3251.413 kb on - strand, within ABID97_RS15705at 3251.814 kb on + strand, within ABID97_RS15705at 3251.814 kb on + strand, within ABID97_RS15705at 3251.814 kb on + strand, within ABID97_RS15705at 3251.815 kb on - strand, within ABID97_RS15705at 3251.815 kb on - strand, within ABID97_RS15705at 3252.057 kb on + strand, within ABID97_RS15705at 3252.367 kb on - strandat 3252.395 kb on - strandat 3252.588 kb on - strandat 3252.649 kb on - strandat 3253.146 kb on - strand, within ABID97_RS15710at 3253.163 kb on + strand, within ABID97_RS15710at 3253.190 kb on + strand, within ABID97_RS15710at 3253.284 kb on - strand, within ABID97_RS15710at 3253.406 kb on + strand, within ABID97_RS15710at 3253.406 kb on + strand, within ABID97_RS15710at 3253.485 kb on - strand, within ABID97_RS15710

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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3,249,880 + ABID97_RS15700 0.45 +0.1
3,250,066 + ABID97_RS15700 0.58 -1.1
3,250,066 + ABID97_RS15700 0.58 -1.1
3,250,067 - ABID97_RS15700 0.58 -0.6
3,250,067 - ABID97_RS15700 0.58 +0.2
3,250,321 + ABID97_RS15700 0.75 -0.0
3,250,321 + ABID97_RS15700 0.75 -0.2
3,250,322 - ABID97_RS15700 0.75 -1.3
3,250,438 + ABID97_RS15700 0.83 +0.2
3,250,439 - ABID97_RS15700 0.83 -0.1
3,250,827 - -0.0
3,251,100 + ABID97_RS15705 0.15 +1.6
3,251,100 + ABID97_RS15705 0.15 +1.1
3,251,100 + ABID97_RS15705 0.15 +0.7
3,251,101 - ABID97_RS15705 0.15 +0.7
3,251,103 + ABID97_RS15705 0.15 +1.6
3,251,103 + ABID97_RS15705 0.15 -2.3
3,251,103 + ABID97_RS15705 0.15 +0.6
3,251,413 - ABID97_RS15705 0.34 +1.6
3,251,814 + ABID97_RS15705 0.58 -0.3
3,251,814 + ABID97_RS15705 0.58 +0.3
3,251,814 + ABID97_RS15705 0.58 +0.6
3,251,815 - ABID97_RS15705 0.58 +0.3
3,251,815 - ABID97_RS15705 0.58 -0.0
3,252,057 + ABID97_RS15705 0.73 -0.1
3,252,367 - +0.8
3,252,395 - -0.1
3,252,588 - -1.2
3,252,649 - -0.9
3,253,146 - ABID97_RS15710 0.42 -0.0
3,253,163 + ABID97_RS15710 0.44 -0.5
3,253,190 + ABID97_RS15710 0.46 -0.2
3,253,284 - ABID97_RS15710 0.53 -0.1
3,253,406 + ABID97_RS15710 0.63 +0.1
3,253,406 + ABID97_RS15710 0.63 +2.2
3,253,485 - ABID97_RS15710 0.70 -0.3

Or see this region's nucleotide sequence