Strain Fitness in Variovorax sp. OAS795 around ABID97_RS15375

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS15365 and ABID97_RS15370 are separated by 43 nucleotidesABID97_RS15370 and ABID97_RS15375 are separated by 21 nucleotidesABID97_RS15375 and ABID97_RS15380 overlap by 4 nucleotides ABID97_RS15365: ABID97_RS15365 - sulfate adenylyltransferase subunit CysD, at 3,178,518 to 3,179,471 _RS15365 ABID97_RS15370: ABID97_RS15370 - phosphoadenosine phosphosulfate reductase family protein, at 3,179,515 to 3,180,147 _RS15370 ABID97_RS15375: ABID97_RS15375 - DUF934 domain-containing protein, at 3,180,169 to 3,180,564 _RS15375 ABID97_RS15380: ABID97_RS15380 - nitrite/sulfite reductase, at 3,180,561 to 3,182,339 _RS15380 Position (kb) 3180 3181Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 3179.574 kb on - strandat 3179.609 kb on + strand, within ABID97_RS15370at 3179.609 kb on + strand, within ABID97_RS15370at 3179.615 kb on + strand, within ABID97_RS15370at 3179.615 kb on + strand, within ABID97_RS15370at 3179.615 kb on + strand, within ABID97_RS15370at 3179.616 kb on - strand, within ABID97_RS15370at 3179.616 kb on - strand, within ABID97_RS15370at 3179.616 kb on - strand, within ABID97_RS15370at 3179.616 kb on - strand, within ABID97_RS15370at 3179.879 kb on + strand, within ABID97_RS15370at 3179.879 kb on + strand, within ABID97_RS15370at 3179.879 kb on + strand, within ABID97_RS15370at 3179.880 kb on - strand, within ABID97_RS15370at 3179.880 kb on - strand, within ABID97_RS15370at 3179.931 kb on - strand, within ABID97_RS15370at 3180.218 kb on + strand, within ABID97_RS15375at 3180.218 kb on + strand, within ABID97_RS15375at 3180.218 kb on + strand, within ABID97_RS15375at 3180.219 kb on - strand, within ABID97_RS15375at 3180.219 kb on - strand, within ABID97_RS15375at 3180.676 kb on + strandat 3181.486 kb on + strand, within ABID97_RS15380at 3181.486 kb on + strand, within ABID97_RS15380at 3181.487 kb on - strand, within ABID97_RS15380at 3181.487 kb on - strand, within ABID97_RS15380at 3181.531 kb on + strand, within ABID97_RS15380at 3181.532 kb on - strand, within ABID97_RS15380at 3181.532 kb on - strand, within ABID97_RS15380

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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3,179,574 - -2.5
3,179,609 + ABID97_RS15370 0.15 -3.3
3,179,609 + ABID97_RS15370 0.15 -2.4
3,179,615 + ABID97_RS15370 0.16 -3.0
3,179,615 + ABID97_RS15370 0.16 -3.4
3,179,615 + ABID97_RS15370 0.16 -2.5
3,179,616 - ABID97_RS15370 0.16 -2.0
3,179,616 - ABID97_RS15370 0.16 -4.2
3,179,616 - ABID97_RS15370 0.16 -3.3
3,179,616 - ABID97_RS15370 0.16 -3.7
3,179,879 + ABID97_RS15370 0.58 -2.5
3,179,879 + ABID97_RS15370 0.58 -3.2
3,179,879 + ABID97_RS15370 0.58 -2.4
3,179,880 - ABID97_RS15370 0.58 -3.4
3,179,880 - ABID97_RS15370 0.58 -3.6
3,179,931 - ABID97_RS15370 0.66 -0.9
3,180,218 + ABID97_RS15375 0.12 -4.3
3,180,218 + ABID97_RS15375 0.12 -4.9
3,180,218 + ABID97_RS15375 0.12 -1.0
3,180,219 - ABID97_RS15375 0.13 -4.8
3,180,219 - ABID97_RS15375 0.13 -4.8
3,180,676 + -4.3
3,181,486 + ABID97_RS15380 0.52 -2.6
3,181,486 + ABID97_RS15380 0.52 -2.2
3,181,487 - ABID97_RS15380 0.52 -5.0
3,181,487 - ABID97_RS15380 0.52 -5.1
3,181,531 + ABID97_RS15380 0.55 -4.1
3,181,532 - ABID97_RS15380 0.55 -3.2
3,181,532 - ABID97_RS15380 0.55 -5.7

Or see this region's nucleotide sequence