Strain Fitness in Variovorax sp. OAS795 around ABID97_RS15365

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS15360 and ABID97_RS15365 overlap by 1 nucleotidesABID97_RS15365 and ABID97_RS15370 are separated by 43 nucleotidesABID97_RS15370 and ABID97_RS15375 are separated by 21 nucleotides ABID97_RS15360: ABID97_RS15360 - GTP-binding protein, at 3,177,178 to 3,178,518 _RS15360 ABID97_RS15365: ABID97_RS15365 - sulfate adenylyltransferase subunit CysD, at 3,178,518 to 3,179,471 _RS15365 ABID97_RS15370: ABID97_RS15370 - phosphoadenosine phosphosulfate reductase family protein, at 3,179,515 to 3,180,147 _RS15370 ABID97_RS15375: ABID97_RS15375 - DUF934 domain-containing protein, at 3,180,169 to 3,180,564 _RS15375 Position (kb) 3178 3179 3180Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 3178.063 kb on - strand, within ABID97_RS15360at 3178.202 kb on + strand, within ABID97_RS15360at 3178.202 kb on + strand, within ABID97_RS15360at 3178.202 kb on + strand, within ABID97_RS15360at 3178.203 kb on - strand, within ABID97_RS15360at 3178.203 kb on - strand, within ABID97_RS15360at 3178.203 kb on - strand, within ABID97_RS15360at 3178.259 kb on + strand, within ABID97_RS15360at 3178.454 kb on - strandat 3178.525 kb on + strandat 3178.526 kb on - strandat 3178.799 kb on - strand, within ABID97_RS15365at 3178.799 kb on - strand, within ABID97_RS15365at 3178.799 kb on - strand, within ABID97_RS15365at 3178.801 kb on + strand, within ABID97_RS15365at 3178.801 kb on + strand, within ABID97_RS15365at 3178.801 kb on + strand, within ABID97_RS15365at 3178.802 kb on - strand, within ABID97_RS15365at 3178.837 kb on + strand, within ABID97_RS15365at 3179.574 kb on - strandat 3179.609 kb on + strand, within ABID97_RS15370at 3179.609 kb on + strand, within ABID97_RS15370at 3179.615 kb on + strand, within ABID97_RS15370at 3179.615 kb on + strand, within ABID97_RS15370at 3179.615 kb on + strand, within ABID97_RS15370at 3179.616 kb on - strand, within ABID97_RS15370at 3179.616 kb on - strand, within ABID97_RS15370at 3179.616 kb on - strand, within ABID97_RS15370at 3179.616 kb on - strand, within ABID97_RS15370at 3179.879 kb on + strand, within ABID97_RS15370at 3179.879 kb on + strand, within ABID97_RS15370at 3179.879 kb on + strand, within ABID97_RS15370at 3179.880 kb on - strand, within ABID97_RS15370at 3179.880 kb on - strand, within ABID97_RS15370at 3179.931 kb on - strand, within ABID97_RS15370at 3180.218 kb on + strand, within ABID97_RS15375at 3180.218 kb on + strand, within ABID97_RS15375at 3180.218 kb on + strand, within ABID97_RS15375at 3180.219 kb on - strand, within ABID97_RS15375at 3180.219 kb on - strand, within ABID97_RS15375

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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3,178,063 - ABID97_RS15360 0.66 -2.7
3,178,202 + ABID97_RS15360 0.76 -2.4
3,178,202 + ABID97_RS15360 0.76 -2.2
3,178,202 + ABID97_RS15360 0.76 -2.9
3,178,203 - ABID97_RS15360 0.76 -0.4
3,178,203 - ABID97_RS15360 0.76 -2.4
3,178,203 - ABID97_RS15360 0.76 -1.8
3,178,259 + ABID97_RS15360 0.81 +1.0
3,178,454 - -1.2
3,178,525 + -2.0
3,178,526 - -1.9
3,178,799 - ABID97_RS15365 0.29 -2.7
3,178,799 - ABID97_RS15365 0.29 -2.4
3,178,799 - ABID97_RS15365 0.29 -1.0
3,178,801 + ABID97_RS15365 0.30 -1.8
3,178,801 + ABID97_RS15365 0.30 -2.5
3,178,801 + ABID97_RS15365 0.30 -2.5
3,178,802 - ABID97_RS15365 0.30 -3.1
3,178,837 + ABID97_RS15365 0.33 -2.1
3,179,574 - -2.5
3,179,609 + ABID97_RS15370 0.15 -3.3
3,179,609 + ABID97_RS15370 0.15 -2.4
3,179,615 + ABID97_RS15370 0.16 -3.0
3,179,615 + ABID97_RS15370 0.16 -3.4
3,179,615 + ABID97_RS15370 0.16 -2.5
3,179,616 - ABID97_RS15370 0.16 -2.0
3,179,616 - ABID97_RS15370 0.16 -4.2
3,179,616 - ABID97_RS15370 0.16 -3.3
3,179,616 - ABID97_RS15370 0.16 -3.7
3,179,879 + ABID97_RS15370 0.58 -2.5
3,179,879 + ABID97_RS15370 0.58 -3.2
3,179,879 + ABID97_RS15370 0.58 -2.4
3,179,880 - ABID97_RS15370 0.58 -3.4
3,179,880 - ABID97_RS15370 0.58 -3.6
3,179,931 - ABID97_RS15370 0.66 -0.9
3,180,218 + ABID97_RS15375 0.12 -4.3
3,180,218 + ABID97_RS15375 0.12 -4.9
3,180,218 + ABID97_RS15375 0.12 -1.0
3,180,219 - ABID97_RS15375 0.13 -4.8
3,180,219 - ABID97_RS15375 0.13 -4.8

Or see this region's nucleotide sequence