Strain Fitness in Variovorax sp. OAS795 around ABID97_RS13925

Experiment: L-Leucine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS13915 and ABID97_RS13920 are separated by 145 nucleotidesABID97_RS13920 and ABID97_RS13925 are separated by 5 nucleotidesABID97_RS13925 and ABID97_RS13930 are separated by 126 nucleotides ABID97_RS13915: ABID97_RS13915 - tRNA dihydrouridine(20/20a) synthase DusA, at 2,889,783 to 2,890,823 _RS13915 ABID97_RS13920: ABID97_RS13920 - IclR family transcriptional regulator, at 2,890,969 to 2,891,754 _RS13920 ABID97_RS13925: ABID97_RS13925 - GntR family transcriptional regulator, at 2,891,760 to 2,892,407 _RS13925 ABID97_RS13930: ABID97_RS13930 - methylmalonyl-CoA mutase, at 2,892,534 to 2,894,696 _RS13930 Position (kb) 2891 2892 2893Strain fitness (log2 ratio) -2 -1 0 1 2at 2890.834 kb on + strandat 2890.835 kb on - strandat 2890.835 kb on - strandat 2890.874 kb on + strandat 2890.875 kb on - strandat 2890.890 kb on + strandat 2890.952 kb on - strandat 2890.955 kb on - strandat 2891.144 kb on - strand, within ABID97_RS13920at 2891.144 kb on - strand, within ABID97_RS13920at 2891.213 kb on - strand, within ABID97_RS13920at 2891.534 kb on - strand, within ABID97_RS13920at 2891.548 kb on + strand, within ABID97_RS13920at 2891.548 kb on + strand, within ABID97_RS13920at 2891.549 kb on - strand, within ABID97_RS13920at 2891.626 kb on + strand, within ABID97_RS13920at 2891.627 kb on - strand, within ABID97_RS13920at 2891.753 kb on - strandat 2891.762 kb on - strandat 2892.154 kb on + strand, within ABID97_RS13925at 2892.193 kb on + strand, within ABID97_RS13925at 2892.280 kb on + strand, within ABID97_RS13925at 2892.280 kb on + strand, within ABID97_RS13925at 2892.281 kb on - strand, within ABID97_RS13925at 2892.373 kb on + strandat 2892.373 kb on + strandat 2892.374 kb on - strandat 2892.374 kb on - strandat 2892.419 kb on - strandat 2892.460 kb on - strandat 2892.504 kb on - strandat 2892.672 kb on + strandat 2892.672 kb on + strandat 2892.672 kb on + strandat 2892.673 kb on - strandat 2892.702 kb on + strandat 2892.703 kb on - strandat 2892.732 kb on + strandat 2892.759 kb on + strand, within ABID97_RS13930at 2892.759 kb on + strand, within ABID97_RS13930at 2892.759 kb on + strand, within ABID97_RS13930at 2892.760 kb on - strand, within ABID97_RS13930at 2892.828 kb on + strand, within ABID97_RS13930at 2892.828 kb on + strand, within ABID97_RS13930at 2892.829 kb on - strand, within ABID97_RS13930at 2893.056 kb on + strand, within ABID97_RS13930at 2893.152 kb on + strand, within ABID97_RS13930at 2893.152 kb on + strand, within ABID97_RS13930at 2893.152 kb on + strand, within ABID97_RS13930at 2893.153 kb on - strand, within ABID97_RS13930at 2893.153 kb on - strand, within ABID97_RS13930at 2893.153 kb on - strand, within ABID97_RS13930at 2893.153 kb on - strand, within ABID97_RS13930at 2893.203 kb on + strand, within ABID97_RS13930at 2893.321 kb on - strand, within ABID97_RS13930

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
remove
2,890,834 + -0.8
2,890,835 - +0.6
2,890,835 - +0.2
2,890,874 + -0.3
2,890,875 - -0.2
2,890,890 + +0.6
2,890,952 - +1.0
2,890,955 - -0.0
2,891,144 - ABID97_RS13920 0.22 +0.1
2,891,144 - ABID97_RS13920 0.22 -0.1
2,891,213 - ABID97_RS13920 0.31 +1.5
2,891,534 - ABID97_RS13920 0.72 +0.2
2,891,548 + ABID97_RS13920 0.74 +1.0
2,891,548 + ABID97_RS13920 0.74 +0.6
2,891,549 - ABID97_RS13920 0.74 +0.7
2,891,626 + ABID97_RS13920 0.84 +0.7
2,891,627 - ABID97_RS13920 0.84 +0.1
2,891,753 - -0.0
2,891,762 - +2.4
2,892,154 + ABID97_RS13925 0.61 -1.0
2,892,193 + ABID97_RS13925 0.67 -1.3
2,892,280 + ABID97_RS13925 0.80 -1.0
2,892,280 + ABID97_RS13925 0.80 -0.4
2,892,281 - ABID97_RS13925 0.80 -1.1
2,892,373 + -0.3
2,892,373 + -1.2
2,892,374 - -0.2
2,892,374 - +0.3
2,892,419 - +0.3
2,892,460 - -0.7
2,892,504 - -0.7
2,892,672 + -2.3
2,892,672 + -0.6
2,892,672 + -0.1
2,892,673 - -0.2
2,892,702 + -0.6
2,892,703 - +0.6
2,892,732 + -1.3
2,892,759 + ABID97_RS13930 0.10 -0.4
2,892,759 + ABID97_RS13930 0.10 +1.2
2,892,759 + ABID97_RS13930 0.10 -1.0
2,892,760 - ABID97_RS13930 0.10 +1.0
2,892,828 + ABID97_RS13930 0.14 -0.2
2,892,828 + ABID97_RS13930 0.14 -0.3
2,892,829 - ABID97_RS13930 0.14 -0.1
2,893,056 + ABID97_RS13930 0.24 -0.6
2,893,152 + ABID97_RS13930 0.29 -0.6
2,893,152 + ABID97_RS13930 0.29 -0.5
2,893,152 + ABID97_RS13930 0.29 +0.9
2,893,153 - ABID97_RS13930 0.29 -0.4
2,893,153 - ABID97_RS13930 0.29 -0.8
2,893,153 - ABID97_RS13930 0.29 -0.3
2,893,153 - ABID97_RS13930 0.29 -0.3
2,893,203 + ABID97_RS13930 0.31 -1.0
2,893,321 - ABID97_RS13930 0.36 +0.5

Or see this region's nucleotide sequence