Strain Fitness in Variovorax sp. OAS795 around ABID97_RS12765

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS12755 and ABID97_RS12760 overlap by 4 nucleotidesABID97_RS12760 and ABID97_RS12765 are separated by 26 nucleotidesABID97_RS12765 and ABID97_RS12770 are separated by 31 nucleotidesABID97_RS12770 and ABID97_RS12775 are separated by 154 nucleotides ABID97_RS12755: ABID97_RS12755 - calcium incorporation protein MxaA, at 2,644,706 to 2,645,590 _RS12755 ABID97_RS12760: ABID97_RS12760 - DUF58 domain-containing protein, at 2,645,587 to 2,646,462 _RS12760 ABID97_RS12765: ABID97_RS12765 - MoxR family ATPase, at 2,646,489 to 2,647,508 _RS12765 ABID97_RS12770: ABID97_RS12770 - SRPBCC family protein, at 2,647,540 to 2,647,980 _RS12770 ABID97_RS12775: ABID97_RS12775 - YncE family protein, at 2,648,135 to 2,649,118 _RS12775 Position (kb) 2646 2647 2648Strain fitness (log2 ratio) -1 0 1at 2646.437 kb on + strandat 2646.438 kb on - strandat 2646.560 kb on - strandat 2647.243 kb on + strand, within ABID97_RS12765at 2647.244 kb on - strand, within ABID97_RS12765at 2647.244 kb on - strand, within ABID97_RS12765at 2647.252 kb on + strand, within ABID97_RS12765at 2647.252 kb on + strand, within ABID97_RS12765at 2647.542 kb on - strandat 2647.727 kb on + strand, within ABID97_RS12770at 2647.728 kb on - strand, within ABID97_RS12770at 2647.766 kb on + strand, within ABID97_RS12770at 2647.767 kb on - strand, within ABID97_RS12770at 2647.767 kb on - strand, within ABID97_RS12770at 2647.772 kb on + strand, within ABID97_RS12770at 2647.773 kb on - strand, within ABID97_RS12770at 2648.108 kb on + strandat 2648.109 kb on - strandat 2648.109 kb on - strandat 2648.265 kb on + strand, within ABID97_RS12775at 2648.265 kb on + strand, within ABID97_RS12775at 2648.386 kb on - strand, within ABID97_RS12775

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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2,646,437 + -0.1
2,646,438 - +0.0
2,646,560 - +0.0
2,647,243 + ABID97_RS12765 0.74 -0.5
2,647,244 - ABID97_RS12765 0.74 +0.3
2,647,244 - ABID97_RS12765 0.74 +1.0
2,647,252 + ABID97_RS12765 0.75 +0.4
2,647,252 + ABID97_RS12765 0.75 +0.5
2,647,542 - +0.4
2,647,727 + ABID97_RS12770 0.42 +0.0
2,647,728 - ABID97_RS12770 0.43 -0.9
2,647,766 + ABID97_RS12770 0.51 -0.2
2,647,767 - ABID97_RS12770 0.51 -0.4
2,647,767 - ABID97_RS12770 0.51 -0.6
2,647,772 + ABID97_RS12770 0.53 -0.8
2,647,773 - ABID97_RS12770 0.53 +0.3
2,648,108 + -1.0
2,648,109 - +0.4
2,648,109 - +0.2
2,648,265 + ABID97_RS12775 0.13 -0.2
2,648,265 + ABID97_RS12775 0.13 -0.7
2,648,386 - ABID97_RS12775 0.26 -0.2

Or see this region's nucleotide sequence