Experiment: L-Leucine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS12720 and ABID97_RS12725 are separated by 27 nucleotides ABID97_RS12725 and ABID97_RS12730 overlap by 4 nucleotides ABID97_RS12730 and ABID97_RS12735 overlap by 4 nucleotides
ABID97_RS12720: ABID97_RS12720 - pyrroloquinoline quinone biosynthesis protein PqqB, at 2,639,013 to 2,639,936
_RS12720
ABID97_RS12725: ABID97_RS12725 - pyrroloquinoline-quinone synthase PqqC, at 2,639,964 to 2,640,737
_RS12725
ABID97_RS12730: ABID97_RS12730 - pyrroloquinoline quinone biosynthesis peptide chaperone PqqD, at 2,640,734 to 2,641,027
_RS12730
ABID97_RS12735: ABID97_RS12735 - pyrroloquinoline quinone biosynthesis protein PqqE, at 2,641,024 to 2,642,175
_RS12735
Position (kb)
2639
2640
2641 Strain fitness (log2 ratio)
-1
0
1
2 at 2639.520 kb on + strand, within ABID97_RS12720 at 2639.604 kb on + strand, within ABID97_RS12720 at 2639.605 kb on - strand, within ABID97_RS12720 at 2639.605 kb on - strand, within ABID97_RS12720 at 2640.405 kb on + strand, within ABID97_RS12725 at 2640.405 kb on + strand, within ABID97_RS12725 at 2640.406 kb on - strand, within ABID97_RS12725 at 2640.517 kb on - strand, within ABID97_RS12725 at 2640.547 kb on - strand, within ABID97_RS12725 at 2641.082 kb on - strand at 2641.285 kb on + strand, within ABID97_RS12735 at 2641.286 kb on - strand, within ABID97_RS12735 at 2641.586 kb on - strand, within ABID97_RS12735 at 2641.588 kb on + strand, within ABID97_RS12735 at 2641.588 kb on + strand, within ABID97_RS12735
Per-strain Table
Position Strand Gene LocusTag Fraction L-Leucine (C) remove 2,639,520 + ABID97_RS12720 0.55 +0.0 2,639,604 + ABID97_RS12720 0.64 +0.1 2,639,605 - ABID97_RS12720 0.64 +0.3 2,639,605 - ABID97_RS12720 0.64 +0.0 2,640,405 + ABID97_RS12725 0.57 +2.2 2,640,405 + ABID97_RS12725 0.57 +0.5 2,640,406 - ABID97_RS12725 0.57 -0.6 2,640,517 - ABID97_RS12725 0.71 +1.3 2,640,547 - ABID97_RS12725 0.75 +0.4 2,641,082 - +0.1 2,641,285 + ABID97_RS12735 0.23 -1.1 2,641,286 - ABID97_RS12735 0.23 +2.3 2,641,586 - ABID97_RS12735 0.49 +0.3 2,641,588 + ABID97_RS12735 0.49 +1.2 2,641,588 + ABID97_RS12735 0.49 +0.0
Or see this region's nucleotide sequence