Strain Fitness in Variovorax sp. OAS795 around ABID97_RS12725

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS12720 and ABID97_RS12725 are separated by 27 nucleotidesABID97_RS12725 and ABID97_RS12730 overlap by 4 nucleotidesABID97_RS12730 and ABID97_RS12735 overlap by 4 nucleotides ABID97_RS12720: ABID97_RS12720 - pyrroloquinoline quinone biosynthesis protein PqqB, at 2,639,013 to 2,639,936 _RS12720 ABID97_RS12725: ABID97_RS12725 - pyrroloquinoline-quinone synthase PqqC, at 2,639,964 to 2,640,737 _RS12725 ABID97_RS12730: ABID97_RS12730 - pyrroloquinoline quinone biosynthesis peptide chaperone PqqD, at 2,640,734 to 2,641,027 _RS12730 ABID97_RS12735: ABID97_RS12735 - pyrroloquinoline quinone biosynthesis protein PqqE, at 2,641,024 to 2,642,175 _RS12735 Position (kb) 2639 2640 2641Strain fitness (log2 ratio) -1 0 1 2at 2639.520 kb on + strand, within ABID97_RS12720at 2639.604 kb on + strand, within ABID97_RS12720at 2639.605 kb on - strand, within ABID97_RS12720at 2639.605 kb on - strand, within ABID97_RS12720at 2640.405 kb on + strand, within ABID97_RS12725at 2640.405 kb on + strand, within ABID97_RS12725at 2640.406 kb on - strand, within ABID97_RS12725at 2640.517 kb on - strand, within ABID97_RS12725at 2640.547 kb on - strand, within ABID97_RS12725at 2641.082 kb on - strandat 2641.285 kb on + strand, within ABID97_RS12735at 2641.286 kb on - strand, within ABID97_RS12735at 2641.586 kb on - strand, within ABID97_RS12735at 2641.588 kb on + strand, within ABID97_RS12735at 2641.588 kb on + strand, within ABID97_RS12735

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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2,639,520 + ABID97_RS12720 0.55 +0.0
2,639,604 + ABID97_RS12720 0.64 +0.1
2,639,605 - ABID97_RS12720 0.64 +0.3
2,639,605 - ABID97_RS12720 0.64 +0.0
2,640,405 + ABID97_RS12725 0.57 +2.2
2,640,405 + ABID97_RS12725 0.57 +0.5
2,640,406 - ABID97_RS12725 0.57 -0.6
2,640,517 - ABID97_RS12725 0.71 +1.3
2,640,547 - ABID97_RS12725 0.75 +0.4
2,641,082 - +0.1
2,641,285 + ABID97_RS12735 0.23 -1.1
2,641,286 - ABID97_RS12735 0.23 +2.3
2,641,586 - ABID97_RS12735 0.49 +0.3
2,641,588 + ABID97_RS12735 0.49 +1.2
2,641,588 + ABID97_RS12735 0.49 +0.0

Or see this region's nucleotide sequence