Strain Fitness in Variovorax sp. OAS795 around ABID97_RS12425

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS12420 and ABID97_RS12425 are separated by 198 nucleotidesABID97_RS12425 and ABID97_RS12430 are separated by 106 nucleotides ABID97_RS12420: ABID97_RS12420 - acetyl-CoA C-acetyltransferase, at 2,573,050 to 2,574,228 _RS12420 ABID97_RS12425: ABID97_RS12425 - LysR substrate-binding domain-containing protein, at 2,574,427 to 2,575,338 _RS12425 ABID97_RS12430: ABID97_RS12430 - tripartite tricarboxylate transporter substrate binding protein, at 2,575,445 to 2,576,437 _RS12430 Position (kb) 2574 2575 2576Strain fitness (log2 ratio) -1 0 1at 2573.503 kb on + strand, within ABID97_RS12420at 2574.455 kb on + strandat 2574.491 kb on + strandat 2574.492 kb on - strandat 2574.492 kb on - strandat 2574.495 kb on + strandat 2574.495 kb on + strandat 2574.495 kb on + strandat 2574.495 kb on + strandat 2574.495 kb on + strandat 2574.495 kb on + strandat 2574.495 kb on + strandat 2574.496 kb on - strandat 2574.496 kb on - strandat 2574.527 kb on + strand, within ABID97_RS12425at 2575.080 kb on - strand, within ABID97_RS12425at 2575.366 kb on + strandat 2575.724 kb on + strand, within ABID97_RS12430at 2575.775 kb on + strand, within ABID97_RS12430at 2575.776 kb on - strand, within ABID97_RS12430at 2575.928 kb on + strand, within ABID97_RS12430at 2575.929 kb on - strand, within ABID97_RS12430at 2576.015 kb on + strand, within ABID97_RS12430at 2576.169 kb on + strand, within ABID97_RS12430

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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2,573,503 + ABID97_RS12420 0.38 -0.4
2,574,455 + +0.0
2,574,491 + -0.5
2,574,492 - -0.8
2,574,492 - -0.5
2,574,495 + -0.3
2,574,495 + +0.7
2,574,495 + -0.8
2,574,495 + -0.3
2,574,495 + -0.2
2,574,495 + -1.5
2,574,495 + -0.5
2,574,496 - -0.1
2,574,496 - +0.8
2,574,527 + ABID97_RS12425 0.11 +1.6
2,575,080 - ABID97_RS12425 0.72 -0.4
2,575,366 + +0.5
2,575,724 + ABID97_RS12430 0.28 -0.6
2,575,775 + ABID97_RS12430 0.33 -0.3
2,575,776 - ABID97_RS12430 0.33 -0.2
2,575,928 + ABID97_RS12430 0.49 +0.2
2,575,929 - ABID97_RS12430 0.49 -0.2
2,576,015 + ABID97_RS12430 0.57 -0.1
2,576,169 + ABID97_RS12430 0.73 -0.2

Or see this region's nucleotide sequence