Strain Fitness in Variovorax sp. OAS795 around ABID97_RS11640

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS11635 and ABID97_RS11640 are separated by 245 nucleotidesABID97_RS11640 and ABID97_RS11645 are separated by 275 nucleotides ABID97_RS11635: ABID97_RS11635 - branched-chain amino acid ABC transporter substrate-binding protein, at 2,403,314 to 2,404,585 _RS11635 ABID97_RS11640: ABID97_RS11640 - TetR family transcriptional regulator, at 2,404,831 to 2,405,472 _RS11640 ABID97_RS11645: ABID97_RS11645 - glutamine amidotransferase, at 2,405,748 to 2,406,488 _RS11645 Position (kb) 2404 2405 2406Strain fitness (log2 ratio) -2 -1 0 1at 2404.387 kb on - strand, within ABID97_RS11635at 2404.521 kb on - strandat 2404.629 kb on - strandat 2404.629 kb on - strandat 2404.653 kb on + strandat 2404.653 kb on + strandat 2404.653 kb on + strandat 2404.657 kb on - strandat 2404.686 kb on + strandat 2404.729 kb on + strandat 2404.739 kb on + strandat 2404.794 kb on + strandat 2404.795 kb on - strandat 2405.152 kb on + strand, within ABID97_RS11640at 2405.153 kb on - strand, within ABID97_RS11640at 2405.153 kb on - strand, within ABID97_RS11640at 2405.153 kb on - strand, within ABID97_RS11640at 2405.196 kb on + strand, within ABID97_RS11640at 2405.234 kb on + strand, within ABID97_RS11640at 2405.238 kb on - strand, within ABID97_RS11640at 2405.637 kb on - strandat 2405.711 kb on + strandat 2405.711 kb on + strandat 2405.712 kb on - strandat 2405.749 kb on + strandat 2405.819 kb on + strandat 2406.046 kb on - strand, within ABID97_RS11645at 2406.300 kb on - strand, within ABID97_RS11645

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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2,404,387 - ABID97_RS11635 0.84 -0.1
2,404,521 - -0.8
2,404,629 - -0.7
2,404,629 - -0.4
2,404,653 + -0.1
2,404,653 + -0.3
2,404,653 + +0.4
2,404,657 - -0.0
2,404,686 + +0.5
2,404,729 + +1.4
2,404,739 + -0.2
2,404,794 + +0.4
2,404,795 - -0.3
2,405,152 + ABID97_RS11640 0.50 -2.3
2,405,153 - ABID97_RS11640 0.50 -1.9
2,405,153 - ABID97_RS11640 0.50 -2.3
2,405,153 - ABID97_RS11640 0.50 -1.7
2,405,196 + ABID97_RS11640 0.57 -0.9
2,405,234 + ABID97_RS11640 0.63 -2.2
2,405,238 - ABID97_RS11640 0.63 -2.5
2,405,637 - +1.1
2,405,711 + +0.0
2,405,711 + -0.1
2,405,712 - +1.2
2,405,749 + +0.0
2,405,819 + +0.2
2,406,046 - ABID97_RS11645 0.40 -1.4
2,406,300 - ABID97_RS11645 0.74 +0.6

Or see this region's nucleotide sequence