Strain Fitness in Variovorax sp. OAS795 around ABID97_RS11545

Experiment: L-Leucine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS11535 and ABID97_RS11540 are separated by 1 nucleotidesABID97_RS11540 and ABID97_RS11545 overlap by 4 nucleotidesABID97_RS11545 and ABID97_RS11550 overlap by 8 nucleotides ABID97_RS11535: ABID97_RS11535 - ABC transporter ATP-binding protein, at 2,381,024 to 2,381,806 _RS11535 ABID97_RS11540: ABID97_RS11540 - branched-chain amino acid ABC transporter permease, at 2,381,808 to 2,382,752 _RS11540 ABID97_RS11545: ABID97_RS11545 - branched-chain amino acid ABC transporter permease, at 2,382,749 to 2,383,621 _RS11545 ABID97_RS11550: ABID97_RS11550 - alpha-hydroxy acid oxidase, at 2,383,614 to 2,384,789 _RS11550 Position (kb) 2382 2383 2384Strain fitness (log2 ratio) -1 0 1at 2382.267 kb on - strand, within ABID97_RS11540at 2383.218 kb on + strand, within ABID97_RS11545at 2384.332 kb on + strand, within ABID97_RS11550at 2384.392 kb on + strand, within ABID97_RS11550

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
remove
2,382,267 - ABID97_RS11540 0.49 +0.2
2,383,218 + ABID97_RS11545 0.54 -1.1
2,384,332 + ABID97_RS11550 0.61 +1.6
2,384,392 + ABID97_RS11550 0.66 +0.6

Or see this region's nucleotide sequence