Strain Fitness in Variovorax sp. OAS795 around ABID97_RS10885

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS10875 and ABID97_RS10880 are separated by 136 nucleotidesABID97_RS10880 and ABID97_RS10885 are separated by 100 nucleotidesABID97_RS10885 and ABID97_RS10890 are separated by 147 nucleotides ABID97_RS10875: ABID97_RS10875 - peroxiredoxin, at 2,252,737 to 2,253,213 _RS10875 ABID97_RS10880: ABID97_RS10880 - Mth938-like domain-containing protein, at 2,253,350 to 2,253,733 _RS10880 ABID97_RS10885: ABID97_RS10885 - pyridoxal phosphate-dependent aminotransferase, at 2,253,834 to 2,255,066 _RS10885 ABID97_RS10890: ABID97_RS10890 - homoserine dehydrogenase, at 2,255,214 to 2,256,536 _RS10890 Position (kb) 2253 2254 2255 2256Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2253.420 kb on + strand, within ABID97_RS10880at 2253.420 kb on + strand, within ABID97_RS10880at 2253.421 kb on - strand, within ABID97_RS10880at 2253.421 kb on - strand, within ABID97_RS10880at 2253.760 kb on + strandat 2254.128 kb on + strand, within ABID97_RS10885at 2254.461 kb on + strand, within ABID97_RS10885at 2254.476 kb on + strand, within ABID97_RS10885at 2254.557 kb on + strand, within ABID97_RS10885at 2254.830 kb on + strand, within ABID97_RS10885at 2254.830 kb on + strand, within ABID97_RS10885at 2254.860 kb on + strand, within ABID97_RS10885at 2255.231 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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2,253,420 + ABID97_RS10880 0.18 +1.6
2,253,420 + ABID97_RS10880 0.18 +2.8
2,253,421 - ABID97_RS10880 0.18 -0.2
2,253,421 - ABID97_RS10880 0.18 -0.6
2,253,760 + -0.8
2,254,128 + ABID97_RS10885 0.24 -0.3
2,254,461 + ABID97_RS10885 0.51 -2.0
2,254,476 + ABID97_RS10885 0.52 +0.1
2,254,557 + ABID97_RS10885 0.59 -1.3
2,254,830 + ABID97_RS10885 0.81 -1.5
2,254,830 + ABID97_RS10885 0.81 -2.4
2,254,860 + ABID97_RS10885 0.83 -2.0
2,255,231 - +1.1

Or see this region's nucleotide sequence