Strain Fitness in Variovorax sp. OAS795 around ABID97_RS10105

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS10100 and ABID97_RS10105 are separated by 143 nucleotidesABID97_RS10105 and ABID97_RS10110 are separated by 31 nucleotides ABID97_RS10100: ABID97_RS10100 - O-acetylhomoserine aminocarboxypropyltransferase, at 2,098,113 to 2,099,423 _RS10100 ABID97_RS10105: ABID97_RS10105 - CBS domain-containing protein, at 2,099,567 to 2,100,007 _RS10105 ABID97_RS10110: ABID97_RS10110 - tripartite tricarboxylate transporter substrate binding protein, at 2,100,039 to 2,101,019 _RS10110 Position (kb) 2099 2100 2101Strain fitness (log2 ratio) -2 -1 0 1 2at 2098.693 kb on + strand, within ABID97_RS10100at 2098.811 kb on - strand, within ABID97_RS10100at 2099.059 kb on + strand, within ABID97_RS10100at 2099.060 kb on - strand, within ABID97_RS10100at 2099.086 kb on + strand, within ABID97_RS10100at 2099.087 kb on - strand, within ABID97_RS10100at 2099.467 kb on + strandat 2099.516 kb on + strandat 2099.517 kb on - strandat 2099.518 kb on + strandat 2099.519 kb on - strandat 2099.519 kb on - strandat 2099.919 kb on - strand, within ABID97_RS10105at 2099.978 kb on + strandat 2099.978 kb on + strandat 2099.979 kb on - strandat 2099.979 kb on - strandat 2099.979 kb on - strandat 2099.979 kb on - strandat 2099.979 kb on - strandat 2100.005 kb on + strandat 2100.006 kb on - strandat 2100.547 kb on + strand, within ABID97_RS10110at 2100.548 kb on - strand, within ABID97_RS10110at 2100.548 kb on - strand, within ABID97_RS10110at 2100.596 kb on - strand, within ABID97_RS10110at 2100.754 kb on + strand, within ABID97_RS10110at 2100.996 kb on + strandat 2100.996 kb on + strandat 2100.996 kb on + strandat 2100.996 kb on + strandat 2100.997 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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2,098,693 + ABID97_RS10100 0.44 +1.3
2,098,811 - ABID97_RS10100 0.53 -0.7
2,099,059 + ABID97_RS10100 0.72 +0.7
2,099,060 - ABID97_RS10100 0.72 -0.3
2,099,086 + ABID97_RS10100 0.74 -0.1
2,099,087 - ABID97_RS10100 0.74 -0.0
2,099,467 + -0.6
2,099,516 + +0.7
2,099,517 - +1.0
2,099,518 + -2.2
2,099,519 - -1.0
2,099,519 - -0.7
2,099,919 - ABID97_RS10105 0.80 -1.9
2,099,978 + -1.4
2,099,978 + -2.1
2,099,979 - -2.3
2,099,979 - +0.7
2,099,979 - -0.3
2,099,979 - -1.8
2,099,979 - -1.6
2,100,005 + +0.2
2,100,006 - +0.4
2,100,547 + ABID97_RS10110 0.52 -0.6
2,100,548 - ABID97_RS10110 0.52 +0.1
2,100,548 - ABID97_RS10110 0.52 +0.4
2,100,596 - ABID97_RS10110 0.57 -1.3
2,100,754 + ABID97_RS10110 0.73 +1.7
2,100,996 + +2.7
2,100,996 + -0.9
2,100,996 + -0.6
2,100,996 + +0.0
2,100,997 - -1.5

Or see this region's nucleotide sequence