Strain Fitness in Variovorax sp. OAS795 around ABID97_RS09935

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS09930 and ABID97_RS09935 are separated by 133 nucleotidesABID97_RS09935 and ABID97_RS09940 are separated by 3 nucleotides ABID97_RS09930: ABID97_RS09930 - type I glutamate--ammonia ligase, at 2,063,575 to 2,064,990 _RS09930 ABID97_RS09935: ABID97_RS09935 - hypothetical protein, at 2,065,124 to 2,065,627 _RS09935 ABID97_RS09940: ABID97_RS09940 - nitrogen regulation protein NR(II), at 2,065,631 to 2,066,710 _RS09940 Position (kb) 2065 2066Strain fitness (log2 ratio) -3 -2 -1 0 1at 2064.988 kb on + strandat 2065.214 kb on + strand, within ABID97_RS09935at 2065.214 kb on + strand, within ABID97_RS09935at 2065.215 kb on - strand, within ABID97_RS09935at 2065.517 kb on + strand, within ABID97_RS09935at 2065.518 kb on - strand, within ABID97_RS09935at 2065.526 kb on + strand, within ABID97_RS09935at 2065.526 kb on + strand, within ABID97_RS09935at 2065.527 kb on - strand, within ABID97_RS09935at 2065.527 kb on - strand, within ABID97_RS09935at 2065.527 kb on - strand, within ABID97_RS09935at 2065.527 kb on - strand, within ABID97_RS09935at 2065.625 kb on + strandat 2066.147 kb on + strand, within ABID97_RS09940at 2066.475 kb on + strand, within ABID97_RS09940at 2066.567 kb on + strand, within ABID97_RS09940at 2066.567 kb on + strand, within ABID97_RS09940

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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2,064,988 + -0.9
2,065,214 + ABID97_RS09935 0.18 -0.9
2,065,214 + ABID97_RS09935 0.18 -2.0
2,065,215 - ABID97_RS09935 0.18 -1.3
2,065,517 + ABID97_RS09935 0.78 -1.0
2,065,518 - ABID97_RS09935 0.78 -0.8
2,065,526 + ABID97_RS09935 0.80 -0.5
2,065,526 + ABID97_RS09935 0.80 -1.5
2,065,527 - ABID97_RS09935 0.80 -3.0
2,065,527 - ABID97_RS09935 0.80 -0.6
2,065,527 - ABID97_RS09935 0.80 -1.2
2,065,527 - ABID97_RS09935 0.80 -2.3
2,065,625 + -0.4
2,066,147 + ABID97_RS09940 0.48 +0.7
2,066,475 + ABID97_RS09940 0.78 -0.4
2,066,567 + ABID97_RS09940 0.87 -0.2
2,066,567 + ABID97_RS09940 0.87 -0.2

Or see this region's nucleotide sequence