Strain Fitness in Variovorax sp. OAS795 around ABID97_RS09320

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS09315 and ABID97_RS09320 are separated by 71 nucleotidesABID97_RS09320 and ABID97_RS09325 are separated by 108 nucleotides ABID97_RS09315: ABID97_RS09315 - substrate-binding domain-containing protein, at 1,958,389 to 1,959,495 _RS09315 ABID97_RS09320: ABID97_RS09320 - aspartate aminotransferase family protein, at 1,959,567 to 1,960,922 _RS09320 ABID97_RS09325: ABID97_RS09325 - LysR family transcriptional regulator, at 1,961,031 to 1,961,999 _RS09325 Position (kb) 1959 1960 1961Strain fitness (log2 ratio) -1 0 1 2at 1958.939 kb on + strand, within ABID97_RS09315at 1959.531 kb on - strandat 1959.680 kb on - strandat 1959.680 kb on - strandat 1959.680 kb on - strandat 1959.680 kb on - strandat 1959.776 kb on - strand, within ABID97_RS09320at 1959.932 kb on - strand, within ABID97_RS09320at 1959.961 kb on + strand, within ABID97_RS09320at 1959.961 kb on + strand, within ABID97_RS09320at 1959.994 kb on + strand, within ABID97_RS09320at 1959.994 kb on + strand, within ABID97_RS09320at 1959.994 kb on + strand, within ABID97_RS09320at 1959.995 kb on - strand, within ABID97_RS09320at 1959.995 kb on - strand, within ABID97_RS09320at 1960.454 kb on - strand, within ABID97_RS09320at 1960.573 kb on + strand, within ABID97_RS09320at 1960.573 kb on + strand, within ABID97_RS09320at 1960.657 kb on + strand, within ABID97_RS09320at 1960.840 kb on + strandat 1960.964 kb on + strandat 1960.964 kb on + strandat 1960.964 kb on + strandat 1960.964 kb on + strandat 1960.965 kb on - strandat 1960.965 kb on - strandat 1961.904 kb on + strandat 1961.905 kb on - strandat 1961.905 kb on - strandat 1961.905 kb on - strandat 1961.905 kb on - strandat 1961.905 kb on - strandat 1961.905 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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1,958,939 + ABID97_RS09315 0.50 +0.4
1,959,531 - +0.4
1,959,680 - -0.0
1,959,680 - +0.2
1,959,680 - -0.2
1,959,680 - +2.7
1,959,776 - ABID97_RS09320 0.15 -0.6
1,959,932 - ABID97_RS09320 0.27 -0.9
1,959,961 + ABID97_RS09320 0.29 -0.1
1,959,961 + ABID97_RS09320 0.29 -0.2
1,959,994 + ABID97_RS09320 0.31 -0.3
1,959,994 + ABID97_RS09320 0.31 +0.1
1,959,994 + ABID97_RS09320 0.31 -0.0
1,959,995 - ABID97_RS09320 0.32 -0.5
1,959,995 - ABID97_RS09320 0.32 -1.6
1,960,454 - ABID97_RS09320 0.65 +0.4
1,960,573 + ABID97_RS09320 0.74 +0.3
1,960,573 + ABID97_RS09320 0.74 -0.5
1,960,657 + ABID97_RS09320 0.80 -0.2
1,960,840 + -0.0
1,960,964 + +0.2
1,960,964 + -0.3
1,960,964 + -0.1
1,960,964 + +0.3
1,960,965 - -0.2
1,960,965 - -0.5
1,961,904 + +0.6
1,961,905 - +0.4
1,961,905 - +0.5
1,961,905 - -0.1
1,961,905 - -0.6
1,961,905 - -1.1
1,961,905 - -0.6

Or see this region's nucleotide sequence