Strain Fitness in Variovorax sp. OAS795 around ABID97_RS09105

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS09100 and ABID97_RS09105 are separated by 52 nucleotidesABID97_RS09105 and ABID97_RS09110 are separated by 8 nucleotides ABID97_RS09100: ABID97_RS09100 - AAA family ATPase, at 1,908,937 to 1,910,088 _RS09100 ABID97_RS09105: ABID97_RS09105 - CpaF family protein, at 1,910,141 to 1,911,514 _RS09105 ABID97_RS09110: ABID97_RS09110 - type II secretion system F family protein, at 1,911,523 to 1,912,515 _RS09110 Position (kb) 1910 1911 1912Strain fitness (log2 ratio) -1 0 1at 1910.246 kb on + strandat 1910.516 kb on + strand, within ABID97_RS09105at 1910.516 kb on + strand, within ABID97_RS09105at 1910.517 kb on - strand, within ABID97_RS09105at 1911.512 kb on + strandat 1911.607 kb on + strandat 1911.607 kb on + strandat 1911.608 kb on - strandat 1911.625 kb on + strand, within ABID97_RS09110at 1911.949 kb on + strand, within ABID97_RS09110at 1911.949 kb on + strand, within ABID97_RS09110at 1912.450 kb on + strandat 1912.451 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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1,910,246 + -0.5
1,910,516 + ABID97_RS09105 0.27 -0.2
1,910,516 + ABID97_RS09105 0.27 -0.3
1,910,517 - ABID97_RS09105 0.27 -0.8
1,911,512 + +0.4
1,911,607 + -0.6
1,911,607 + -0.1
1,911,608 - +0.2
1,911,625 + ABID97_RS09110 0.10 -0.2
1,911,949 + ABID97_RS09110 0.43 +0.9
1,911,949 + ABID97_RS09110 0.43 -0.4
1,912,450 + +0.5
1,912,451 - -0.4

Or see this region's nucleotide sequence