Experiment: L-Leucine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS08470 and ABID97_RS08475 are separated by 269 nucleotides ABID97_RS08475 and ABID97_RS08480 are separated by 146 nucleotides ABID97_RS08480 and ABID97_RS08485 are separated by 24 nucleotides ABID97_RS08485 and ABID97_RS08490 are separated by 18 nucleotides
ABID97_RS08470: ABID97_RS08470 - LysR substrate-binding domain-containing protein, at 1,779,992 to 1,780,945
_RS08470
ABID97_RS08475: ABID97_RS08475 - entericidin A/B family lipoprotein, at 1,781,215 to 1,781,355
_RS08475
ABID97_RS08480: ABID97_RS08480 - citrate synthase, at 1,781,502 to 1,782,812
_RS08480
ABID97_RS08485: ABID97_RS08485 - succinate dehydrogenase assembly factor 2, at 1,782,837 to 1,783,160
_RS08485
ABID97_RS08490: ABID97_RS08490 - succinate dehydrogenase iron-sulfur subunit, at 1,783,179 to 1,783,880
_RS08490
Position (kb)
1781
1782
1783 Strain fitness (log2 ratio)
-1
0
1 at 1780.659 kb on + strand, within ABID97_RS08470 at 1780.695 kb on + strand, within ABID97_RS08470 at 1780.695 kb on + strand, within ABID97_RS08470 at 1780.695 kb on + strand, within ABID97_RS08470 at 1780.695 kb on + strand, within ABID97_RS08470 at 1780.696 kb on - strand, within ABID97_RS08470 at 1780.696 kb on - strand, within ABID97_RS08470 at 1780.696 kb on - strand, within ABID97_RS08470 at 1780.767 kb on + strand, within ABID97_RS08470 at 1781.216 kb on + strand at 1781.216 kb on + strand at 1781.217 kb on - strand at 1781.417 kb on - strand at 1781.971 kb on + strand, within ABID97_RS08480 at 1782.172 kb on + strand, within ABID97_RS08480 at 1782.221 kb on - strand, within ABID97_RS08480 at 1782.248 kb on - strand, within ABID97_RS08480 at 1782.248 kb on - strand, within ABID97_RS08480 at 1782.674 kb on - strand, within ABID97_RS08480 at 1782.834 kb on + strand at 1782.834 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Leucine (C) remove 1,780,659 + ABID97_RS08470 0.70 +0.5 1,780,695 + ABID97_RS08470 0.74 +0.4 1,780,695 + ABID97_RS08470 0.74 -0.7 1,780,695 + ABID97_RS08470 0.74 +0.2 1,780,695 + ABID97_RS08470 0.74 -0.4 1,780,696 - ABID97_RS08470 0.74 +1.0 1,780,696 - ABID97_RS08470 0.74 -1.4 1,780,696 - ABID97_RS08470 0.74 +0.1 1,780,767 + ABID97_RS08470 0.81 +0.1 1,781,216 + +1.7 1,781,216 + +0.3 1,781,217 - +0.3 1,781,417 - +0.5 1,781,971 + ABID97_RS08480 0.36 -0.3 1,782,172 + ABID97_RS08480 0.51 -0.3 1,782,221 - ABID97_RS08480 0.55 +1.7 1,782,248 - ABID97_RS08480 0.57 +0.1 1,782,248 - ABID97_RS08480 0.57 -0.3 1,782,674 - ABID97_RS08480 0.89 -0.6 1,782,834 + +0.5 1,782,834 + -0.8
Or see this region's nucleotide sequence