Strain Fitness in Variovorax sp. OAS795 around ABID97_RS08480

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS08470 and ABID97_RS08475 are separated by 269 nucleotidesABID97_RS08475 and ABID97_RS08480 are separated by 146 nucleotidesABID97_RS08480 and ABID97_RS08485 are separated by 24 nucleotidesABID97_RS08485 and ABID97_RS08490 are separated by 18 nucleotides ABID97_RS08470: ABID97_RS08470 - LysR substrate-binding domain-containing protein, at 1,779,992 to 1,780,945 _RS08470 ABID97_RS08475: ABID97_RS08475 - entericidin A/B family lipoprotein, at 1,781,215 to 1,781,355 _RS08475 ABID97_RS08480: ABID97_RS08480 - citrate synthase, at 1,781,502 to 1,782,812 _RS08480 ABID97_RS08485: ABID97_RS08485 - succinate dehydrogenase assembly factor 2, at 1,782,837 to 1,783,160 _RS08485 ABID97_RS08490: ABID97_RS08490 - succinate dehydrogenase iron-sulfur subunit, at 1,783,179 to 1,783,880 _RS08490 Position (kb) 1781 1782 1783Strain fitness (log2 ratio) -1 0 1at 1780.659 kb on + strand, within ABID97_RS08470at 1780.695 kb on + strand, within ABID97_RS08470at 1780.695 kb on + strand, within ABID97_RS08470at 1780.695 kb on + strand, within ABID97_RS08470at 1780.695 kb on + strand, within ABID97_RS08470at 1780.696 kb on - strand, within ABID97_RS08470at 1780.696 kb on - strand, within ABID97_RS08470at 1780.696 kb on - strand, within ABID97_RS08470at 1780.767 kb on + strand, within ABID97_RS08470at 1781.216 kb on + strandat 1781.216 kb on + strandat 1781.217 kb on - strandat 1781.417 kb on - strandat 1781.971 kb on + strand, within ABID97_RS08480at 1782.172 kb on + strand, within ABID97_RS08480at 1782.221 kb on - strand, within ABID97_RS08480at 1782.248 kb on - strand, within ABID97_RS08480at 1782.248 kb on - strand, within ABID97_RS08480at 1782.674 kb on - strand, within ABID97_RS08480at 1782.834 kb on + strandat 1782.834 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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1,780,659 + ABID97_RS08470 0.70 +0.5
1,780,695 + ABID97_RS08470 0.74 +0.4
1,780,695 + ABID97_RS08470 0.74 -0.7
1,780,695 + ABID97_RS08470 0.74 +0.2
1,780,695 + ABID97_RS08470 0.74 -0.4
1,780,696 - ABID97_RS08470 0.74 +1.0
1,780,696 - ABID97_RS08470 0.74 -1.4
1,780,696 - ABID97_RS08470 0.74 +0.1
1,780,767 + ABID97_RS08470 0.81 +0.1
1,781,216 + +1.7
1,781,216 + +0.3
1,781,217 - +0.3
1,781,417 - +0.5
1,781,971 + ABID97_RS08480 0.36 -0.3
1,782,172 + ABID97_RS08480 0.51 -0.3
1,782,221 - ABID97_RS08480 0.55 +1.7
1,782,248 - ABID97_RS08480 0.57 +0.1
1,782,248 - ABID97_RS08480 0.57 -0.3
1,782,674 - ABID97_RS08480 0.89 -0.6
1,782,834 + +0.5
1,782,834 + -0.8

Or see this region's nucleotide sequence