Strain Fitness in Variovorax sp. OAS795 around ABID97_RS07850

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS07845 and ABID97_RS07850 are separated by 19 nucleotidesABID97_RS07850 and ABID97_RS07855 are separated by 13 nucleotidesABID97_RS07855 and ABID97_RS07860 are separated by 39 nucleotides ABID97_RS07845: ABID97_RS07845 - ABC transporter ATP-binding protein, at 1,649,216 to 1,650,412 _RS07845 ABID97_RS07850: ABID97_RS07850 - ABC transporter ATP-binding protein, at 1,650,432 to 1,651,205 _RS07850 ABID97_RS07855: ABID97_RS07855 - ABC transporter ATP-binding protein, at 1,651,219 to 1,652,004 _RS07855 ABID97_RS07860: ABID97_RS07860 - tripartite tricarboxylate transporter substrate binding protein, at 1,652,044 to 1,653,021 _RS07860 Position (kb) 1650 1651 1652Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1649.601 kb on - strand, within ABID97_RS07845at 1649.601 kb on - strand, within ABID97_RS07845at 1649.786 kb on + strand, within ABID97_RS07845at 1649.787 kb on - strand, within ABID97_RS07845at 1649.789 kb on + strand, within ABID97_RS07845at 1649.789 kb on + strand, within ABID97_RS07845at 1649.789 kb on + strand, within ABID97_RS07845at 1649.790 kb on - strand, within ABID97_RS07845at 1649.790 kb on - strand, within ABID97_RS07845at 1649.790 kb on - strand, within ABID97_RS07845at 1649.790 kb on - strand, within ABID97_RS07845at 1649.790 kb on - strand, within ABID97_RS07845at 1649.790 kb on - strand, within ABID97_RS07845at 1649.792 kb on + strand, within ABID97_RS07845at 1649.792 kb on + strand, within ABID97_RS07845at 1649.793 kb on - strand, within ABID97_RS07845at 1649.793 kb on - strand, within ABID97_RS07845at 1650.138 kb on - strand, within ABID97_RS07845at 1650.597 kb on + strand, within ABID97_RS07850at 1650.597 kb on + strand, within ABID97_RS07850at 1650.597 kb on + strand, within ABID97_RS07850at 1650.597 kb on + strand, within ABID97_RS07850at 1650.597 kb on + strand, within ABID97_RS07850at 1650.597 kb on + strand, within ABID97_RS07850at 1650.598 kb on - strand, within ABID97_RS07850at 1650.852 kb on + strand, within ABID97_RS07850at 1650.852 kb on + strandat 1650.879 kb on + strand, within ABID97_RS07850at 1650.879 kb on + strand, within ABID97_RS07850at 1650.879 kb on + strand, within ABID97_RS07850at 1650.900 kb on + strand, within ABID97_RS07850at 1650.901 kb on - strand, within ABID97_RS07850at 1651.146 kb on + strandat 1651.147 kb on - strandat 1651.182 kb on + strandat 1651.183 kb on - strandat 1651.331 kb on - strand, within ABID97_RS07855at 1651.603 kb on + strand, within ABID97_RS07855at 1651.913 kb on - strand, within ABID97_RS07855at 1652.084 kb on + strandat 1652.084 kb on + strandat 1652.084 kb on + strandat 1652.084 kb on + strandat 1652.085 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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1,649,601 - ABID97_RS07845 0.32 -2.6
1,649,601 - ABID97_RS07845 0.32 -3.9
1,649,786 + ABID97_RS07845 0.48 -4.8
1,649,787 - ABID97_RS07845 0.48 -0.3
1,649,789 + ABID97_RS07845 0.48 -5.1
1,649,789 + ABID97_RS07845 0.48 -5.0
1,649,789 + ABID97_RS07845 0.48 -3.9
1,649,790 - ABID97_RS07845 0.48 -0.6
1,649,790 - ABID97_RS07845 0.48 -3.5
1,649,790 - ABID97_RS07845 0.48 -2.2
1,649,790 - ABID97_RS07845 0.48 -3.5
1,649,790 - ABID97_RS07845 0.48 -5.0
1,649,790 - ABID97_RS07845 0.48 -4.5
1,649,792 + ABID97_RS07845 0.48 -3.4
1,649,792 + ABID97_RS07845 0.48 +0.1
1,649,793 - ABID97_RS07845 0.48 -3.3
1,649,793 - ABID97_RS07845 0.48 -2.6
1,650,138 - ABID97_RS07845 0.77 -1.9
1,650,597 + ABID97_RS07850 0.21 -2.2
1,650,597 + ABID97_RS07850 0.21 -4.3
1,650,597 + ABID97_RS07850 0.21 -3.4
1,650,597 + ABID97_RS07850 0.21 -5.7
1,650,597 + ABID97_RS07850 0.21 -3.2
1,650,597 + ABID97_RS07850 0.21 -1.8
1,650,598 - ABID97_RS07850 0.21 -3.4
1,650,852 + ABID97_RS07850 0.54 -5.2
1,650,852 + -0.3
1,650,879 + ABID97_RS07850 0.58 -4.1
1,650,879 + ABID97_RS07850 0.58 -3.3
1,650,879 + ABID97_RS07850 0.58 -3.4
1,650,900 + ABID97_RS07850 0.60 -2.8
1,650,901 - ABID97_RS07850 0.61 -3.5
1,651,146 + -0.9
1,651,147 - -1.9
1,651,182 + -4.5
1,651,183 - -3.2
1,651,331 - ABID97_RS07855 0.14 -2.9
1,651,603 + ABID97_RS07855 0.49 -1.3
1,651,913 - ABID97_RS07855 0.88 -4.9
1,652,084 + -0.2
1,652,084 + +0.1
1,652,084 + +0.3
1,652,084 + -0.7
1,652,085 - +0.1

Or see this region's nucleotide sequence