Strain Fitness in Variovorax sp. OAS795 around ABID97_RS07610

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS07605 and ABID97_RS07610 are separated by 99 nucleotidesABID97_RS07610 and ABID97_RS07615 overlap by 17 nucleotides ABID97_RS07605: ABID97_RS07605 - hemolysin III family protein, at 1,606,777 to 1,607,445 _RS07605 ABID97_RS07610: ABID97_RS07610 - response regulator transcription factor, at 1,607,545 to 1,608,099 _RS07610 ABID97_RS07615: ABID97_RS07615 - ATP-binding protein, at 1,608,083 to 1,609,492 _RS07615 Position (kb) 1607 1608 1609Strain fitness (log2 ratio) -2 -1 0 1at 1606.579 kb on + strandat 1606.579 kb on + strandat 1606.579 kb on + strandat 1606.580 kb on - strandat 1606.580 kb on - strandat 1606.761 kb on - strandat 1606.761 kb on - strandat 1606.904 kb on + strand, within ABID97_RS07605at 1606.905 kb on - strand, within ABID97_RS07605at 1606.958 kb on + strand, within ABID97_RS07605at 1607.003 kb on + strand, within ABID97_RS07605at 1607.003 kb on + strand, within ABID97_RS07605at 1607.004 kb on - strand, within ABID97_RS07605at 1607.004 kb on - strand, within ABID97_RS07605at 1607.141 kb on + strand, within ABID97_RS07605at 1607.141 kb on + strand, within ABID97_RS07605at 1607.141 kb on + strand, within ABID97_RS07605at 1607.141 kb on + strand, within ABID97_RS07605at 1607.141 kb on + strand, within ABID97_RS07605at 1607.141 kb on + strand, within ABID97_RS07605at 1607.142 kb on - strand, within ABID97_RS07605at 1607.142 kb on - strand, within ABID97_RS07605at 1607.142 kb on - strand, within ABID97_RS07605at 1607.162 kb on + strand, within ABID97_RS07605at 1607.162 kb on + strand, within ABID97_RS07605at 1607.163 kb on - strand, within ABID97_RS07605at 1607.225 kb on + strand, within ABID97_RS07605at 1607.225 kb on + strand, within ABID97_RS07605at 1607.226 kb on - strand, within ABID97_RS07605at 1607.226 kb on - strand, within ABID97_RS07605at 1607.226 kb on - strand, within ABID97_RS07605at 1607.244 kb on - strand, within ABID97_RS07605at 1607.318 kb on + strand, within ABID97_RS07605at 1607.546 kb on + strandat 1607.546 kb on + strandat 1608.003 kb on - strand, within ABID97_RS07610at 1608.321 kb on + strand, within ABID97_RS07615at 1608.322 kb on - strand, within ABID97_RS07615at 1608.966 kb on + strand, within ABID97_RS07615at 1608.966 kb on + strand, within ABID97_RS07615

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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1,606,579 + +0.0
1,606,579 + +0.4
1,606,579 + +0.1
1,606,580 - +0.2
1,606,580 - -0.0
1,606,761 - -0.4
1,606,761 - +0.1
1,606,904 + ABID97_RS07605 0.19 -0.3
1,606,905 - ABID97_RS07605 0.19 -0.1
1,606,958 + ABID97_RS07605 0.27 -0.7
1,607,003 + ABID97_RS07605 0.34 +1.4
1,607,003 + ABID97_RS07605 0.34 +0.9
1,607,004 - ABID97_RS07605 0.34 -0.1
1,607,004 - ABID97_RS07605 0.34 +0.4
1,607,141 + ABID97_RS07605 0.54 -0.2
1,607,141 + ABID97_RS07605 0.54 +0.4
1,607,141 + ABID97_RS07605 0.54 -0.2
1,607,141 + ABID97_RS07605 0.54 -0.2
1,607,141 + ABID97_RS07605 0.54 +0.1
1,607,141 + ABID97_RS07605 0.54 +0.7
1,607,142 - ABID97_RS07605 0.55 +0.0
1,607,142 - ABID97_RS07605 0.55 -0.1
1,607,142 - ABID97_RS07605 0.55 -0.3
1,607,162 + ABID97_RS07605 0.58 -0.5
1,607,162 + ABID97_RS07605 0.58 +0.1
1,607,163 - ABID97_RS07605 0.58 -0.6
1,607,225 + ABID97_RS07605 0.67 -0.1
1,607,225 + ABID97_RS07605 0.67 -0.1
1,607,226 - ABID97_RS07605 0.67 -0.0
1,607,226 - ABID97_RS07605 0.67 -0.2
1,607,226 - ABID97_RS07605 0.67 -0.1
1,607,244 - ABID97_RS07605 0.70 -0.7
1,607,318 + ABID97_RS07605 0.81 +0.1
1,607,546 + -1.2
1,607,546 + -0.1
1,608,003 - ABID97_RS07610 0.83 -0.1
1,608,321 + ABID97_RS07615 0.17 -1.9
1,608,322 - ABID97_RS07615 0.17 +0.4
1,608,966 + ABID97_RS07615 0.63 -0.2
1,608,966 + ABID97_RS07615 0.63 -0.6

Or see this region's nucleotide sequence