Strain Fitness in Variovorax sp. OAS795 around ABID97_RS07425

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS07415 and ABID97_RS07420 are separated by 125 nucleotidesABID97_RS07420 and ABID97_RS07425 are separated by 20 nucleotidesABID97_RS07425 and ABID97_RS07430 overlap by 4 nucleotidesABID97_RS07430 and ABID97_RS07435 are separated by 11 nucleotides ABID97_RS07415: ABID97_RS07415 - quinolinate synthase NadA, at 1,566,406 to 1,567,524 _RS07415 ABID97_RS07420: ABID97_RS07420 - 6-carboxytetrahydropterin synthase, at 1,567,650 to 1,568,012 _RS07420 ABID97_RS07425: ABID97_RS07425 - 7-carboxy-7-deazaguanine synthase, at 1,568,033 to 1,568,671 _RS07425 ABID97_RS07430: ABID97_RS07430 - pantoate--beta-alanine ligase, at 1,568,668 to 1,569,516 _RS07430 ABID97_RS07435: ABID97_RS07435 - 3-methyl-2-oxobutanoate hydroxymethyltransferase, at 1,569,528 to 1,570,421 _RS07435 Position (kb) 1568 1569Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1567.912 kb on + strand, within ABID97_RS07420at 1567.912 kb on + strand, within ABID97_RS07420at 1567.912 kb on + strand, within ABID97_RS07420at 1567.913 kb on - strand, within ABID97_RS07420at 1567.913 kb on - strand, within ABID97_RS07420at 1568.643 kb on + strandat 1568.643 kb on + strandat 1568.664 kb on + strandat 1568.664 kb on + strandat 1568.664 kb on + strandat 1568.665 kb on - strandat 1568.665 kb on - strandat 1568.665 kb on - strandat 1568.808 kb on - strand, within ABID97_RS07430at 1568.887 kb on + strand, within ABID97_RS07430at 1568.887 kb on + strand, within ABID97_RS07430at 1568.888 kb on - strand, within ABID97_RS07430at 1568.888 kb on - strand, within ABID97_RS07430at 1568.888 kb on - strand, within ABID97_RS07430at 1568.888 kb on - strand, within ABID97_RS07430at 1568.888 kb on - strand, within ABID97_RS07430at 1568.957 kb on + strand, within ABID97_RS07430at 1569.075 kb on - strand, within ABID97_RS07430at 1569.234 kb on - strand, within ABID97_RS07430at 1569.318 kb on - strand, within ABID97_RS07430at 1569.512 kb on + strandat 1569.512 kb on + strandat 1569.512 kb on + strandat 1569.512 kb on + strandat 1569.512 kb on + strandat 1569.512 kb on + strandat 1569.512 kb on + strandat 1569.512 kb on + strandat 1569.512 kb on + strandat 1569.512 kb on + strandat 1569.512 kb on + strandat 1569.512 kb on + strandat 1569.512 kb on + strandat 1569.512 kb on + strandat 1569.513 kb on - strandat 1569.513 kb on - strandat 1569.513 kb on - strandat 1569.513 kb on - strandat 1569.513 kb on - strandat 1569.513 kb on - strandat 1569.513 kb on - strandat 1569.513 kb on - strandat 1569.513 kb on - strandat 1569.513 kb on - strandat 1569.513 kb on - strandat 1569.530 kb on - strandat 1569.583 kb on + strandat 1569.583 kb on + strandat 1569.584 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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1,567,912 + ABID97_RS07420 0.72 +0.4
1,567,912 + ABID97_RS07420 0.72 -0.9
1,567,912 + ABID97_RS07420 0.72 +0.4
1,567,913 - ABID97_RS07420 0.72 +0.7
1,567,913 - ABID97_RS07420 0.72 -0.1
1,568,643 + -0.2
1,568,643 + +0.1
1,568,664 + -0.2
1,568,664 + -0.4
1,568,664 + +0.5
1,568,665 - +0.5
1,568,665 - -0.8
1,568,665 - -0.3
1,568,808 - ABID97_RS07430 0.16 +0.4
1,568,887 + ABID97_RS07430 0.26 -5.3
1,568,887 + ABID97_RS07430 0.26 -4.2
1,568,888 - ABID97_RS07430 0.26 -2.5
1,568,888 - ABID97_RS07430 0.26 -5.4
1,568,888 - ABID97_RS07430 0.26 -4.7
1,568,888 - ABID97_RS07430 0.26 -4.9
1,568,888 - ABID97_RS07430 0.26 -3.4
1,568,957 + ABID97_RS07430 0.34 -3.3
1,569,075 - ABID97_RS07430 0.48 -4.6
1,569,234 - ABID97_RS07430 0.67 -4.3
1,569,318 - ABID97_RS07430 0.77 -0.6
1,569,512 + -4.8
1,569,512 + -3.9
1,569,512 + -3.8
1,569,512 + -4.5
1,569,512 + -2.1
1,569,512 + -3.6
1,569,512 + -3.7
1,569,512 + +0.2
1,569,512 + +0.4
1,569,512 + -3.0
1,569,512 + -3.7
1,569,512 + -5.2
1,569,512 + -3.5
1,569,512 + +0.7
1,569,513 - -3.7
1,569,513 - -0.6
1,569,513 - -4.3
1,569,513 - -3.7
1,569,513 - -4.2
1,569,513 - -1.3
1,569,513 - +0.9
1,569,513 - -4.9
1,569,513 - -3.4
1,569,513 - -0.3
1,569,513 - -3.9
1,569,530 - +1.7
1,569,583 + -4.6
1,569,583 + -4.3
1,569,584 - -2.6

Or see this region's nucleotide sequence